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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1579 fasta sequence
[CTCCCGCGCGTGACGACGAGGAGACTCCTCCCACCGAATCGAACAACCAGCGTGCTCTCTCCTCCGAATCCGCCGTCGACGATGCCATCCGCCGCGGCGGGCGACGGCAAGGGTAAGCGGCGGTTAGTGGGGATGCCGCCGGCGAGGGCGGCGGCGGCGGACTTCGCGATGGGCAGGGCGGCGGCGGTGGTGGCGAAGACGGGGGCGGCGCCGGTGGAGCGGGTGAAGCTGCTGCTGCAGAACCAGGCCGAGATGCTCCGCCGCGGGAGCCTCACCCGCCCCTACAGGGGCATCGCCGACGCCTTCGGCCGCGTGCTCCGCGAGGAGGGCGTCGCGGCGCTCTGGCGCGGCAACCAGGCCAATGTCATCCGATACTTCCCCACTCAGGCTTTTAACTTCGCATTCAAGGGCTACTTCAAGAGCATCTTTGGCTACGACAAGGAGAAAGACGGAAAATGGAAATGGTTAGCTGGCAATGTAGCATCTGGCAGTGCTGCAGGGGCTACAACCTCATCCTTGCTATATCATCTGGATTATGCACGGACAAGGCTAGCTACTGATGCAATTGAATCACAGGGAAGCAAACGTCAGTTCAGTGGGCTGCTTGATGTCTACAAAAAGACACTTAAAACTGATGGTATTCGTGGATTATATCGAGGTTTCAGTGTGTCCATTGTGGGTATCACTCTATATCGAGGTCTCTATTTCGGAATCTATGATACCATGAAGCCTCTTATTCTAGTGGGACCACTGCAGGAAAATTTCTTCGCCAGTTTTGCCTTGGGCTGGGCAATAACTACGTTCTCTGGAGCCTGCGCCTATCCATTTGATACACTCCGTCGCAGAATGATGTTAACTTCTGGGCAGCCATTGAAATATAAGAACGCCTTCCATGCAGCAAAACAGATAGTTTCTACTGAAGGGTTCTTCACACTATTCAGAGGGGTCGGCGCAAATATTCTCTCAGGAATGGCAGGAGCTGGAGTTCTTGCTGGGTATGA-CAGCTCCACCGGTTTGCAGGTCAACATGGTTACAATTTTGAGAGCAAGATGAAAGGGGCATTGAAATGATGTGCAAATGGGGATAAATAGAGGCATATCCTTGGTTGAAGTTTGGATTGGCCAAATGGGATGTATGAGCTTGGATAATCAAGCGGGCGAAACAGAACTCCAGATACTCCTGCAGTTGATAGGATTGACGGCGAAGAGAACAGCTTTTGCAGGATGTATACTTTCAAGGAGCGGAGATGAAGTCAGAATCAAAAGATAGCTCTTGCGGTAGAAAGAATGTCAATAATTCTGAAACCTGATTCTTGAAGTGTGAATATCGATCGAGAGTTAGATCGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAAATAGAACTTGTGGAATTGCTCCATTGAATAACCTTTCTGGTGTAGTATACCACATTTGTACTACTGTATAGCCAAAAACAAATTAATAACAAACCTCTGGGTGTTCCGAGGATTGGAGTCGGGTCCCAAAGCGGGAATCATACCATCAGAATCTTTCACACCATCCTGTTTATAATGGCCCGCAGGAAATCAAGATAGT]
[+] EMBL AK064725 [CTCCCGCGCGTGACGACGAGGAGACTCCTCCCACCGAATCGAACAACCAGCGTGCTCTCTCCTCCGAATCCGCCGTCGACGATGCCATCCGCCGCGGCGGGCGACGGCAAGGGTAAGCGGCGGTTAGTGGGGATGCCGCCGGCGAGGGCGGCGGCGGCGGACTTCGCGATGGGCAGGGCGGCGGCGGTGGTGGCGAAGACGGGGGCGGCGCCGGTGGAGCGGGTGAAGCTGCTGCTGCAGAACCAGGCCGAGATGCTCCGCCGCGGGAGCCTCACCCGCCCCTACAGGGGCATCGCCGACGCCTTCGGCCGCGTGCTCCGCGAGGAGGGCGTCGCGGCGCTCTGGCGCGGCAACCAGGCCAATGTCATCCGATACTTCCCCACTCAGGCTTTTAACTTCGCATTCAAGGGCTACTTCAAGAGCATCTTTGGCTACGACAAGGAGAAAGACGGAAAATGGAAATGGTTAGCTGGCAATGTAGCATCTGGCAGTGCTGCAGGGGCTACAACCTCATCCTTGCTATATCATCTGGATTATGCACGGACAAGGCTAGCTACTGATGCAATTGAATCACAGGGAAGCAAACGTCAGTTCAGTGGGCTGCTTGATGTCTACAAAAAGACACTTAAAACTGATGGTATTCGTGGATTATATCGAGGTTTCAGTGTGTCCATTGTGGGTATCACTCTATATCGAGGTCTCTATTTCGGAATCTATGATACCATGAAGCCTCTTATTCTAGTGGGACCACTGCAGGAAAATTTCTTCGCCAGTTTTGCCTTGGGCTGGGCAATAACTACGTTCTCTGGAGCCTGCGCCTATCCATTTGATACACTCCGTCGCAGAATGATGTTAACTTCTGGGCAGCCATTGAAATATAAGAACGCCTTCCATGCAGCAAAACAGATAGTTTCTACTGAAGGGTTCTTCACACTATTCAGAGGGGTCGGCGCAAATATTCTCTCAGGAATGGCAGGAGCTGGAGTTCTTGCTGGGTATGA CAGCTCCACCGGTTTGCAGGTCAACATGGTTACAATTTTGAGAGCAAGATGAAAGGGGCATTGAAATGATGTGCAAATGGGGATAAATAGAGGCATATCCTTGGTTGAAGTTTGGATTGGCCAAATGGGATGTATGAGCTTGGATAATCAAGCGGGCGAAACAGAACTCCAGATACTCCTGCAGTTGATAGGATTGACGGCGAAGAGAACAGCTTTTGCAGGATGTATACTTTCAAGGAGCGGAGATGAAGTCAGAATCAAAAGATAGCTCTTGCGGTAGAAAGAATGTCAATAATTCTGAAACCTGATTCTTGAAGTGTGAATATCGATCGAGAGTTAGATCGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAAATAGAACTTGTGGAATTGCTCCATTGAATAACCTTTCTGGTGTAGTATACCACATTTGTACTACTGTATAGCCAAAAACAAATTAATAACAAACCTCTGGGTGTTCCGAGGATTGGAGTCGGGTCCCAAAGCGGGAATCATACCATCAGAATCTTTCACACCATCCTGTTTATAATGGCCCGCAGGAAATCAAGATAGT]
[-] EMBL CB621019 [ CCTGGGGCTGGGCAATAACTACGTTCTCTGGAGCCTGCGCCTATCCATTTGATACACTCCGTCGCAGAATGATGTTAACTTCTGGGCAGCCATTGAAATATAAGAACGCCTTCCATGCAGCAAAACAGATAGTTTCTACTGAAGGGTTCTTCACACTATTCAGAGGGGTCGGCGCAAATATTCTCTCAGGAATGGCAGGAGCTGGAGTTCTTGCTGGGTATGACCAGCTCCACCGGTTTGCAGGTCAACATGGTTACAATTTTGAGAGCAAGATGAAAGGGGCATTGAAATGATGTGCAAATGGGGATAAATAGAGGCATATTCTTGGTTGAAGTTTGGATTGGCCAAATGGGATGTATGAGCTTGGATAATCAAGCGGGCGAAACAGAACTCCAGATACTCCTGCAGTTGATAGGATTGACGGCGAAGAGAACAGCTTTTGCAGGATGTATACTTTCAAGGAGCGGAGATGAAGTCAGAATCAAAAGATAGCTCTTGCGGTAGAAAGAATGTCAATAATTCTGAAACCTGATTCTTGAAGTGTGAATATCGATCGAAAGTTAGATGGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAAATAGAACTTGTGGAATTGCTCCATTGAATACCCTTTCTGGTGTAGTATACCACATTTGTACTACTGTATAGCCAAAAACAAATTAATAACAACCCTCTGGGTGTTCCGAGGATTGGAG ]
consensusID : consensus_4268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CAATAATTCTGAAACCTGATTCTTGAAGTGTGAATATCGATCGAAAGTTAGATCGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAAATAGAACTTGTGGAATTGCTCCATTGAATAACCTTTCTGGTGTAGTATACCACATTTGTACTACTGTATAGCCAAAAACAAATTAATAACAAACCTCTGGGTGTTCCGAGGATTGGAGTCGGGTCCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA755245 [CAATAATTCTGAAACCTGATTCTTGAAGTGTGAATATCGATCGAAAGTTAGATCGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAAATAGAACTTGTGGAATTGCTCCATTGAATAACCTTTCTGGTGTAGTATACCACATTTGTACTACTGTATAGCCAAAAACAAATTAATAACAAACCTCTGGGTGTTCCGAGGATTGGAGTCGGGTCCCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4268#0 CTCCCGCGCGTGACGACGAGGAGACTCCTCCCACCGAATCGAACAACCAGCGTGCTCTCT 60
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 CCTCCGAATCCGCCGTCGACGATGCCATCCGCCGCGGCGGGCGACGGCAAGGGTAAGCGG 120
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 CGGTTAGTGGGGATGCCGCCGGCGAGGGCGGCGGCGGCGGACTTCGCGATGGGCAGGGCG 180
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 GCGGCGGTGGTGGCGAAGACGGGGGCGGCGCCGGTGGAGCGGGTGAAGCTGCTGCTGCAG 240
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 AACCAGGCCGAGATGCTCCGCCGCGGGAGCCTCACCCGCCCCTACAGGGGCATCGCCGAC 300
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 GCCTTCGGCCGCGTGCTCCGCGAGGAGGGCGTCGCGGCGCTCTGGCGCGGCAACCAGGCC 360
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 AATGTCATCCGATACTTCCCCACTCAGGCTTTTAACTTCGCATTCAAGGGCTACTTCAAG 420
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 AGCATCTTTGGCTACGACAAGGAGAAAGACGGAAAATGGAAATGGTTAGCTGGCAATGTA 480
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 GCATCTGGCAGTGCTGCAGGGGCTACAACCTCATCCTTGCTATATCATCTGGATTATGCA 540
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 CGGACAAGGCTAGCTACTGATGCAATTGAATCACAGGGAAGCAAACGTCAGTTCAGTGGG 600
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 CTGCTTGATGTCTACAAAAAGACACTTAAAACTGATGGTATTCGTGGATTATATCGAGGT 660
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 TTCAGTGTGTCCATTGTGGGTATCACTCTATATCGAGGTCTCTATTTCGGAATCTATGAT 720
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 ACCATGAAGCCTCTTATTCTAGTGGGACCACTGCAGGAAAATTTCTTCGCCAGTTTTGCC 780
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 TTGGGCTGGGCAATAACTACGTTCTCTGGAGCCTGCGCCTATCCATTTGATACACTCCGT 840
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 CGCAGAATGATGTTAACTTCTGGGCAGCCATTGAAATATAAGAACGCCTTCCATGCAGCA 900
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 AAACAGATAGTTTCTACTGAAGGGTTCTTCACACTATTCAGAGGGGTCGGCGCAAATATT 960
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 CTCTCAGGAATGGCAGGAGCTGGAGTTCTTGCTGGGTATGACAGCTCCACCGGTTTGCAG 1020
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 GTCAACATGGTTACAATTTTGAGAGCAAGATGAAAGGGGCATTGAAATGATGTGCAAATG 1080
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 GGGATAAATAGAGGCATATCCTTGGTTGAAGTTTGGATTGGCCAAATGGGATGTATGAGC 1140
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 TTGGATAATCAAGCGGGCGAAACAGAACTCCAGATACTCCTGCAGTTGATAGGATTGACG 1200
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 GCGAAGAGAACAGCTTTTGCAGGATGTATACTTTCAAGGAGCGGAGATGAAGTCAGAATC 1260
consensus_4268#1 ------------------------------------------------------------
consensus_4268#0 AAAAGATAGCTCTTGCGGTAGAAAGAATGTCAATAATTCTGAAACCTGATTCTTGAAGTG 1320
consensus_4268#1 ------------------------------CAATAATTCTGAAACCTGATTCTTGAAGTG 30
******************************
consensus_4268#0 TGAATATCGATCGAGAGTTAGATCGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAA 1380
consensus_4268#1 TGAATATCGATCGAAAGTTAGATCGTACTCGCGCTACCAATGCCTTGATGTGAACTGTAA 90
************** *********************************************
consensus_4268#0 ATAGAACTTGTGGAATTGCTCCATTGAATAACCTTTCTGGTGTAGTATACCACATTTGTA 1440
consensus_4268#1 ATAGAACTTGTGGAATTGCTCCATTGAATAACCTTTCTGGTGTAGTATACCACATTTGTA 150
************************************************************
consensus_4268#0 CTACTGTATAGCCAAAAACAAATTAATAACAAACCTCTGGGTGTTCCGAGGATTGGAGTC 1500
consensus_4268#1 CTACTGTATAGCCAAAAACAAATTAATAACAAACCTCTGGGTGTTCCGAGGATTGGAGTC 210
************************************************************
consensus_4268#0 GGGTCCCAAAGCGGGAATCATACCATCAGAATCTTTCACACCATCCTGTTTATAATGGCC 1560
consensus_4268#1 GGGTCCCAAAAAAAAAAAAAAAAAAA---------------------------------- 236
********** ** * * *
consensus_4268#0 CGCAGGAAATCAAGATAGT 1579
consensus_4268#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||