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Oryza sativa
cluster # 4275 cluster # 4275       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4275#0 length = 1474 sequences # 3  

consensusID : consensus_4275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1474
fasta sequence
                              [TCGGGTGCGGCTGCGGCGGCGGCGGCGACGGCGGAGGAGGCGGCGGCGGGCGGGGAGCACGGGCCGTTCCCCATCGAGCAGCTCCAGGCATCTGGTATAGCTGCACTTGATGTGAAAAAGCTCAAAGATGCTGGTCTCTGCACGGTGGAGTCTGTGGTCTACTCACCAAGGAAAGACCTTCTGCAAATTAAAGGGATTAGTGAAGCCAAAGTCGATAAGATAATTGAAGGAGCTTCGAAGCTGGTTCCACTGGGATTTACAAGTGCCAGCCAACTTCATGCACAGAGACTTGAGATTATCCAAGTTACAACTGGATCAAGGGAACTTGATAAAATCTTGGATGGTGGAATAGAAACTGGGTCCATTACAGAGATATATGGTGAATTTCGCTCAGGGAAGACTCAGTTGTGCCACACTCTGTGTGTTACATGTCAGCTCCCATTGGACCAAGGTGGTGGTGAGGGAAAAGCTTTGTATATTGATGCAGAGGGCACATTCAGACCACAAAGACTCCTCCAGATAGCAGACAGGTTTGGGTTGAATGGTGCTGATGTACTTGAGAATGTAGCTTATGCAAGAGCATATAATACTGATCATCAATCAAGACTTTTACTGGAAGCAGCTTCCATGATGGTGGAGACAAGGTTTGCTATTATGATTGTAGATAGTGCAACAGCCTTATACAGAACAGATTTCTCTGGTAGAGGGGAGCTGTCAGCAAGGCAAATGCACCTGGCCAAGTTTCTTAGGAGCCTTCAGAAGTTAGCGGATGAGTTTGGCGTGGCGGTGGTAATCACGAATCAAGTTGTGGCGCAAGTGGATGGTGCTGCAATGTTTGGGCCACAGATCAAACCTATCGGCGGGAACATCATGGCTCATGCTTCCACAACAAGGCTTTTTCTTCGAAAGGGAAGAGCGGAGGAGCGGATATGTAAGGTAGTAAGCTCTCCCTGTCTTGCTGAAGCTGAGGCGAGGTTTCAGATATCACCGGAAGGCGTCACAGATGTTAAGGACTGAAAATCCCAAAAATCGCCTTCAGGATACAGCATGAGTTTGCAGTCTATCTACAGCCTGCTGTTTGCAATCCCAGTGTGGTGGACGCTTGGATTGATGTAGGCCATCCTGTTCAACCACCACCTGCGATAGCGCCCTGGAATCCTGGATGGAAGTACCCATGGTTTCTTCATTGACATTGCTCTTGTGTTTCAGCGGGGGTGTACAGCAAGTCGCCACAATTTTGGCTTGGCACCAGCGATGTTGTTGTTCACTGTTGATGTTAGACGAGCCAGAATTAGTGTAGATAGTTTTATTTAGCTGGTCCTTGTTTTCTTACCGTTTGTAAATGTAGTTTAACGCATGCTAGGATGTTCTAACGTCACATTGTATCGGTTAGCAAAAGTTGTATTCAGTGTTTCAAACAGTTTTCGTTTACATTATATATGCTAACAGGTTTGAATTTGCAAAAAAAAAAAAA]

[+] EMBL AB080264             [TCGGGTGCGGCTGCGGCGGCGGCGGCGACGGCGGAGGAGGCGGCGGCGGGCGGGGAGCACGGGCCGTTCCCCATCGAGCAGCTCCAGGCATCTGGTATAGCTGCACTTGATGTGAAAAAGCTCAAAGATGCTGGTCTCTGCACGGTGGAGTCTGTGGTCTACTCACCAAGGAAAGACCTTCTGCAAATTAAAGGGATTAGTGAAGCCAAAGTCGATAAGATAATTGAAGGAGCTTCGAAGCTGGTTCCACTGGGATTTACAAGTGCCAGCCAACTTCATGCACAGAGACTTGAGATTATCCAAGTTACAACTGGATCAAGGGAACTTGATAAAATCTTGGATGGTGGAATAGAAACTGGGTCCATTACAGAGATATATGGTGAATTTCGCTCAGGGAAGACTCAGTTGTGCCACACTCTGTGTGTTACATGTCAGCTCCCATTGGACCAAGGTGGTGGTGAGGGAAAAGCTTTGTATATTGATGCAGAGGGCACATTCAGACCACAAAGACTCCTCCAGATAGCAGACAGGTTTGGGTTGAATGGTGCTGATGTACTTGAGAATGTAGCTTATGCAAGAGCATATAATACTGATCATCAATCAAGACTTTTACTGGAAGCAGCTTCCATGATGGTGGAGACAAGGTTTGCTATTATGATTGTAGATAGTGCAACAGCCTTATACAGAACAGATTTCTCTGGTAGAGGGGAGCTGTCAGCAAGGCAAATGCACCTGGCCAAGTTTCTTAGGAGCCTTCAGAAGTTAGCGGATGAGTTTGGCGTGGCGGTGGTAATCACGAATCAAGTTGTGGCGCAAGTGGATGGTGCTGCAATGTTTGGGCCACAGATCAAACCTATCGGCGGGAACATCATGGCTCATGCTTCCACAACAAGGCTTTTTCTTCGAAAGGGAAGAGCGGAGGAGCGGATATGTAAGGTAGTAAGCTCTCCCTGTCTTGCTGAAGCTGAGGCGAGGTTTCAGATATCACCGGAAGGCGTCACAGATGTTAAGGACTGAAAATCCCAAAAATCGCCTTCAGGATACAGCATGAGTTTGCAGTCTATCTACAGCCTGCTGTTTGCAATCCCAGTGTGGTGGACGCTTGGATTGATGTAGGCCATCCTGTTCAACCACCACCTGCGATAGCGCCCTGGAATCCTGGATGGAAGTACCCATGGTTTCTTCATTGACATTGCTCTTGTGTTTCAGCGGGGGTGTACAGCAAGTCGCCACAATTTTGGCTTGGCACCAGCGATGTTGTTGTTCACTGTTGATGTTAGACGA                                                                                                                                                                                              ]
[+] EMBL AY391714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCAGACCACAAAGACTCCTCCAGATAGCAGACAGGTTTGGGTTGAATGGTGCTGATGTACTTGAGAATGTAGCTTATGCAAGAGCATATAATACTGATCATCAATCAAGACTTTTACTGGAAGCAGCTTCCATGATGGTGGAGACAAGGTTTGCTATTATGATTGTAGATAGTGCAACAGCCTTATACAGAACAGATTTCTCTGGTAGAGGGGAGCTGTCAGCAAGGCAAATGCATCTGGCCAAGTTTCTTAGGAGCCTTCAGAAGTTAGCGGATGAGTTTGGCGTGGCGGTGGTAATCACGAATCAAGTTGTGGCGCAAGTGGATGGTGCTGCAATGTTTGGGCCACAGATCAAACCTATCGGCGGGAACATCATGGCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CA763145             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGTGGTAATCACGAATCAAGTTGTGGCGCAAGTGGATGGTGCTGCAATGTTTGGGCCACAGATCAAACCTATCGGCGGGAACATCATGGCTCATGCTTCCACAACAAGGCTTNTTCTTCGAAAGGGAAGAGCGGAGGAGNGGATATGTAAGGTAGTAAGCTCTCCCTGTCTTGCTGAAGCTGAGGCGAGGTTTCAGATATCACCGGAAGGCGTCACAGATGTTAAGGACTGAAAATCCCAAAAATCGCCTTCAGGATACAGCATGAGTTTGCAGTCTATTTACAGCCTGCTGTTTGCAATCCCAGTGTGGTGGACGCTTGGATTGATGTAGGCCATCCTGTTCAACCACCACCTGCGATAGCGCCCTGGAATCCTGGATGGAAGTACCCATGGTTTTTTCATTGACATTGCTCTTGTGTTTCAGCGGGGGTGTACAGCAAGTCGCCACAATTTTGGCTTGGCACCAGCGATGTTGTTGTTCACTGTTGATGTTAGACGAGCCAGAATTAGTGTAGATAGTTTTATTTAGCTGGTCCTTGTTTTCTTACCGTTTGTAAATGTAGTTTAACGCATGCTAGGATGTTCTAACGTCACATTGTATCGGTTAGCAAAAGTTGTATTCAGTGTTTCAAACAGTTTTCGTTTACATTATATATGCTAACAGGTTTGAATTTGCAAAAAAAAAAAAA]


>consensus_4275#0 TCGGGTGCGGCTGCGGCGGCGGCGGCGACGGCGGAGGAGGCGGCGGCGGGCGGGGAGCAC GGGCCGTTCCCCATCGAGCAGCTCCAGGCATCTGGTATAGCTGCACTTGATGTGAAAAAG CTCAAAGATGCTGGTCTCTGCACGGTGGAGTCTGTGGTCTACTCACCAAGGAAAGACCTT CTGCAAATTAAAGGGATTAGTGAAGCCAAAGTCGATAAGATAATTGAAGGAGCTTCGAAG CTGGTTCCACTGGGATTTACAAGTGCCAGCCAACTTCATGCACAGAGACTTGAGATTATC CAAGTTACAACTGGATCAAGGGAACTTGATAAAATCTTGGATGGTGGAATAGAAACTGGG TCCATTACAGAGATATATGGTGAATTTCGCTCAGGGAAGACTCAGTTGTGCCACACTCTG TGTGTTACATGTCAGCTCCCATTGGACCAAGGTGGTGGTGAGGGAAAAGCTTTGTATATT GATGCAGAGGGCACATTCAGACCACAAAGACTCCTCCAGATAGCAGACAGGTTTGGGTTG AATGGTGCTGATGTACTTGAGAATGTAGCTTATGCAAGAGCATATAATACTGATCATCAA TCAAGACTTTTACTGGAAGCAGCTTCCATGATGGTGGAGACAAGGTTTGCTATTATGATT GTAGATAGTGCAACAGCCTTATACAGAACAGATTTCTCTGGTAGAGGGGAGCTGTCAGCA AGGCAAATGCACCTGGCCAAGTTTCTTAGGAGCCTTCAGAAGTTAGCGGATGAGTTTGGC GTGGCGGTGGTAATCACGAATCAAGTTGTGGCGCAAGTGGATGGTGCTGCAATGTTTGGG CCACAGATCAAACCTATCGGCGGGAACATCATGGCTCATGCTTCCACAACAAGGCTTTTT CTTCGAAAGGGAAGAGCGGAGGAGCGGATATGTAAGGTAGTAAGCTCTCCCTGTCTTGCT GAAGCTGAGGCGAGGTTTCAGATATCACCGGAAGGCGTCACAGATGTTAAGGACTGAAAA TCCCAAAAATCGCCTTCAGGATACAGCATGAGTTTGCAGTCTATCTACAGCCTGCTGTTT GCAATCCCAGTGTGGTGGACGCTTGGATTGATGTAGGCCATCCTGTTCAACCACCACCTG CGATAGCGCCCTGGAATCCTGGATGGAAGTACCCATGGTTTCTTCATTGACATTGCTCTT GTGTTTCAGCGGGGGTGTACAGCAAGTCGCCACAATTTTGGCTTGGCACCAGCGATGTTG TTGTTCACTGTTGATGTTAGACGAGCCAGAATTAGTGTAGATAGTTTTATTTAGCTGGTC CTTGTTTTCTTACCGTTTGTAAATGTAGTTTAACGCATGCTAGGATGTTCTAACGTCACA TTGTATCGGTTAGCAAAAGTTGTATTCAGTGTTTCAAACAGTTTTCGTTTACATTATATA TGCTAACAGGTTTGAATTTGCAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)