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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 796 fasta sequence
[TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCGACATCTTCGCGCGCGA]
[+] EMBL AK068653 [TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCGACATCTTCGCGCGCGA]
[+] EMBL OSR25401A [ GCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTNGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGC ]
consensusID : consensus_4277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTCCACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGCCGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGGGGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC]
[+] EMBL CA755107 [AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTCCACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGCCGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGGGGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4277#0 TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCG 60
consensus_4277#1 --------------------------------AAGCCCAACCCCCGAAGCATCCAACGCG 28
*** ** * ** * **
consensus_4277#0 ACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATC 120
consensus_4277#1 A----GAGGCGGCGAGATGCTG-TCGTCTTCCACCTCCACCCACTGCCTCCACC---AGC 80
* *** ***** * ** ** ** *** ***** ** ****** * *
consensus_4277#0 TAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCG-CCAACCTCCAGGTGCTCCGGCGCGTG 179
consensus_4277#1 CGCCGCCG--CCGCCGGCGAGCCACCAATTCCGGTCGGCCGCC--GCGTTCCGCCGCCCT 136
**** ****** *** * ** * *** * ** ** * * **** ***
consensus_4277#0 GGAGTGGCGGCGGCTTCAATCCGGCTTCGTGC-CGCCCGCGCCACGGGAGGTGATGCACG 238
consensus_4277#1 CCGTCTCCGGCGGCGGCGCCCC---TCCGCGCGCGGCCGCAGCGCGGG-GGCGGCAC-CA 191
******* * ** * ** ** ** **** * **** ** * * *
consensus_4277#0 GCAACCGTTCGACC-ATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACG 297
consensus_4277#1 CCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCC 251
** *** * * * * * * * * ** * * ** ** * *
consensus_4277#0 AGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGC 357
consensus_4277#1 TGGAGGAGCGGCAGCGG------CTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCC 305
**** **** **** ************ **** ***** ** **** ** *
consensus_4277#0 AGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAG 417
consensus_4277#1 AGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCG 365
******* ** * ** * * ********* ***** * ** ** ***** ***** *
consensus_4277#0 ACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCG 477
consensus_4277#1 ACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCT 425
******** ** * ** ** ******** * ****** *** ******* ***
consensus_4277#0 TCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCC 537
consensus_4277#1 GCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCC 485
***************************** *********************** *****
consensus_4277#0 TCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCG 597
consensus_4277#1 TCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCG 545
**** *************************** ************ **************
consensus_4277#0 TCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCT 657
consensus_4277#1 TCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC--------------------- 584
************** **************** ******
consensus_4277#0 GCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCG 717
consensus_4277#1 ------------------------------------------------------------
consensus_4277#0 TGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCC 777
consensus_4277#1 ------------------------------------------------------------
consensus_4277#0 TCGACATCTTCGCGCGCGA 796
consensus_4277#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||