These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1117 fasta sequence [AGCCTCTCTCATCTCAGTATATTCATCAGTAGAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGATCATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCTCTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAATTGCCCTTCAGCGAGAGGCCCTCACATGCATTATCTCAATTGTCAGCCAGTGTCACATTCACTCGCTCAAATCGCGGCAGCAGCCAGCAGCCACTGTGGCAAAAGCAACTGTATTTATCCTTAACTACAGTATCTAGTACTATGATCTCTCTTGGAGATTGGTTAGTTTGTGAGTAAAAGCTGCCAAGCT] [+] EMBL AK060697 [AGCCTCTCTCATCTCAGTATATTCATCAGTAGAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGATCATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCTCTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAATTGCCCTTCAGCGAGAGGCCCTCACATGCATTATCTCAATTGTCAGCCAGTGTCACATTCACTCGCTCAAATCGCGGCAGCAGCCAGCAGCCACTGTGGCAAAAGCAACTGTATTTATCCTTAACTACAGTATCTAGTACTATGATCTCTCTTGGAGATTGGTTAGTTTGTGAGTAAAAGCTGCCAAGCT] [+] EMBL AK102818 [ GAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGATCATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCTCTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAA ] consensusID : consensus_4288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1092 fasta sequence [TAATTATCATCTTGTCTTATTTCTTTCTACAAGGCGATCGAGTACTTGCTTGCTTACAGTTACAGACACTAGAAAAGTACTCCATGGGCGAAATGAAGAGGTAAAACAGCAGCGAATGGAACAGAAAGGAAGCATGGTGGTGGTCGTCGTGGCATGGATGGCGTCTAGTGTTAGTAGCAACTCTTCTCATTATTACTGTACTGGCCATCAGCTTTTGCTGCTAACGCTAATAGCCTCTCTCATCTCAGTATATTCATCAGTAAAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTCGCTCTAATTGCCTCTTGCTTAATTTGCTTGCTACTACTTAATTACTTGCTTACTTACTTAGCAGCAATTAATGGCGCGCGAATGAATATACTAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAAC] [-] EMBL AK099969 [TAATTATCATCTTGTCTTATTTCTTTCTACAAGGCGATCGAGTACTTGCTTGCTTACAGTTACAGACACTAGAAAAGTACTCCATGGGCGAAATGAAGAGGTAAAACAGCAGCGAATGGAACAGAAAGGAAGCATGGTGGTGGTCGTCGTGGCATGGATGGCGTCTAGTGTTAGTAGCAACTCTTCTCATTATTACTGTACTGGCCATCAGCTTTTGCTGCTAACGCTAATAGCCTCTCTCATCTCAGTATATTCATCAGTAAAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTCGCTCTAATTGCCTCTTGCTTAATTTGCTTGCTACTACTTAATTACTTGCTTACTTACTTAGCAGCAATTAATGGCGCGCGAATGAATATACTAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4288#0 ------------------------------------------------------------ consensus_4288#1 TAATTATCATCTTGTCTTATTTCTTTCTACAAGGCGATCGAGTACTTGCTTGCTTACAGT 60 consensus_4288#0 ------------------------------------------------------------ consensus_4288#1 TACAGACACTAGAAAAGTACTCCATGGGCGAAATGAAGAGGTAAAACAGCAGCGAATGGA 120 consensus_4288#0 ------------------------------------------------------------ consensus_4288#1 ACAGAAAGGAAGCATGGTGGTGGTCGTCGTGGCATGGATGGCGTCTAGTGTTAGTAGCAA 180 consensus_4288#0 ---------------------------------------------------AGCCTCTCT 9 consensus_4288#1 CTCTTCTCATTATTACTGTACTGGCCATCAGCTTTTGCTGCTAACGCTAATAGCCTCTCT 240 ********* consensus_4288#0 CATCTCAGTATATTCATCAGTAGAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTG 69 consensus_4288#1 CATCTCAGTATATTCATCAGTAAAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTG 300 ********************** ************************************* consensus_4288#0 AGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGA 129 consensus_4288#1 AGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGA 360 ************************************************************ consensus_4288#0 GAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATG 189 consensus_4288#1 GAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATG 420 ************************************************************ consensus_4288#0 GGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCG 249 consensus_4288#1 GGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCG 480 ************************************************************ consensus_4288#0 GCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGG 309 consensus_4288#1 GCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGG 540 ************************************************************ consensus_4288#0 GCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTC 369 consensus_4288#1 GCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTC 600 ************************************************************ consensus_4288#0 GCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTC 429 consensus_4288#1 GCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTC 660 ************************************************************ consensus_4288#0 TGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACAC 489 consensus_4288#1 TGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACAC 720 ************************************************************ consensus_4288#0 CACCTCCGATGCCTCAACGGATTCAGGT-------------------------------- 517 consensus_4288#1 CACCTCCGATGCCTCAACGGATTCAGGTCGCTCTAATTGCCTCTTGCTTAATTTGCTTGC 780 **************************** consensus_4288#0 ------------------------------------------------------------ consensus_4288#1 TACTACTTAATTACTTGCTTACTTACTTAGCAGCAATTAATGGCGCGCGAATGAATATAC 840 consensus_4288#0 -----ACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGAT 572 consensus_4288#1 TAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGAT 900 ******************************************************* consensus_4288#0 GCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCC 632 consensus_4288#1 GCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCC 960 ************************************************************ consensus_4288#0 GCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCAT 692 consensus_4288#1 GCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCAT 1020 ************************************************************ consensus_4288#0 CACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGA 752 consensus_4288#1 CACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGA 1080 ************************************************************ consensus_4288#0 TCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGAT 812 consensus_4288#1 TCTCCTCTCAAC------------------------------------------------ 1092 ************ consensus_4288#0 CATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCT 872 consensus_4288#1 ------------------------------------------------------------ consensus_4288#0 CTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAATTGCC 932 consensus_4288#1 ------------------------------------------------------------ consensus_4288#0 CTTCAGCGAGAGGCCCTCACATGCATTATCTCAATTGTCAGCCAGTGTCACATTCACTCG 992 consensus_4288#1 ------------------------------------------------------------ consensus_4288#0 CTCAAATCGCGGCAGCAGCCAGCAGCCACTGTGGCAAAAGCAACTGTATTTATCCTTAAC 1052 consensus_4288#1 ------------------------------------------------------------ consensus_4288#0 TACAGTATCTAGTACTATGATCTCTCTTGGAGATTGGTTAGTTTGTGAGTAAAAGCTGCC 1112 consensus_4288#1 ------------------------------------------------------------ consensus_4288#0 AAGCT 1117 consensus_4288#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||