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Oryza sativa
cluster # 4291 cluster # 4291       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4291#0 length = 1433 sequences # 3  

consensusID : consensus_4291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1433
fasta sequence
                              [GCGAATTGGATGTCAAATAATGAAATTTCTCGGTTCTCTCTCTCTCCCACTCTCGCCGTCGCTCTCCGCCATTCTCCACCGCCCACCCACACCGGAGGTCGCCCACCACCGGGGCCTCACCTCCTCCTCCTCCCCCTCGTCATCAAGCAGAGGGGGTGATCGGGGTCGCCGCGATGGATCCTTTGGAATCTGAAGGTGGCTCACAGAAATCCAACAATAAGCCCAAATATTCTAAGTTTACGCAACAGGAGCTTCCAGCATGCAAGCCACTACTAACTCCTGGAATTGTGGTTGCTACCTTCTTGCTGATTGGTATCATATTTGTCCCAATTGGGCTCGCGTCTCTATCTGCATCGCAAGAGATCGTCGAACTGGTGGATCGATATGACACAAATTGTGTGTCCACGCTTGACAAGGTTGGGTTCATTCAGAACACCGATACTGACAAGACATGCACAAGAACACTGACTGTGCCTAAACATATGAAGAGCCCAATCCAGATATATTACCAGATCGGCGACTTCTATCAAAACCATCGACGGTATGTGAAAAGTCGAAGTGATAAACAATTGCGGTATA--AATGCTGTGCACTTGACAAAGGATTGTGATCCTGAAGGTAATACTGTTGATGGTGCTCCAATTATTCCATGTGGCCTTATTGCTTGGAGCTTGTTCAATGATACATATACAATTTCGGTGAACAAGAAGGCCATTGAAGTGAATAAAAAGGATATAGCTTGGAAGAGTGACAAGACCGATAAATTTGGCAGTGATATTTACCCAAGTAATTTTCAGAAGGGCAGTCTAATAGGCGGTGCTAAACTAAATGAGAGCATACCTTTAAGTGAGCAAGAAGACCTCATTGTTTGGATGAGAACCGCTGCCCTCCCAACTTTCAGAAAGCTTTATGGCAGAATCGAGACAGATATTATGGCAAATGATCAATTAACAGTGGTTATACAGAATAACTATAACACATATAGTTTTGGAGGGTCTAAAGCGTTGGTCCTTTCAACTACTTCTTGGATTGGAGGCAAAAACAACTTCATTGGTGTTGCATATCTGACTATCGGAGGCCTATGCATTTTCCTTGCAGTGGGCTTCGTAGTGCTTCTCTACATGGTTAAACCAAGGACTCTTGGAGACCCCTCGTACTTGTCATGGAATAGAGATACTCCAGACCGTCCAAACTAATAGATTGGAATCTCTTTTCTGATATATAAATTTAATAAAGGATCATTTCAATGGGTAAAATGTGAAATTCCTTTACCTGAATCTATGGATGATGTTATGATTCCTATCTAACGTGTTTGTGATAGCCCGATAGGTCCATAGGCATGAGAATACATGAGACAGTGTACTCTGTTGACTCCAATTTTACTTGACAAGAACAGGAGTTGTTCAACTTATTTCTGACTATAAATTAACCCAGA]

[+] EMBL CF322445             [GCGAATTGGATGTCAAATAATGAAATTTCTCGGTTCTCTCTCTCTCCCACTCTCGCCGTCGCTCTCCGCCATTCTCCACCGCCCACCCACACCGGAGGTCGCCCACCACCGGGGCCTCACCTCCTCCTCCTCCCCCTCGTCATCAAGCAGAGGGGGTGATCGGGGTCGCCGCGATGGATCCTTTGGAATCTGAAGGTGGCTCACAGAAATCCAACAATAAGCCCAAATATTCTAAGTTTACGCAACAGGAGCTTCCAGCATGCAAGCCACTACTAACTCCTGGAATTGTGGTTGCTACCTTCTTGCTGATTGGTATCATATTTGTCCCAATTGGGCTCGCGTCTCTATCTGCATCGCAAGAGATCGTCGAACTGGTGGATCGATATGACACAAATTGTGTGTCCACGCTTGACAAGGTTGGGTTCATTCAGAACACCGATACTGACAAGACATGCACAAGAACACTGACTGTGCCTAAACATATGAAGAGCCCAATCCAGATATATTACCAGATCGGCGACTTCTATCAAAACCATCGACGGTATGTGAAAAGTCGAAGTGATAAACAATTGCGGTATAAGAATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK110743             [                  AATGAAATTTCTCGGTTCTCTCTCTCTCCCACTCTCGCCGTCGCTCTCCGCCATTCTCCACCGCCCACCCACACCGGAGGTCGCCCACCACCGGGGCCTCACCTCCTCCTCCTCCCCCTCGTCATCAAGCAGAGGGGGTGATCGGGGTCGCCGCGATGGATCCTTTGGAATCTGAAGGTGGCTCACAGAAATCCAACAATAAGCCCAAATATTCTAAGTTTACGCAACAGGAGCTTCCAGCATGCAAGCCACTACTAACTCCTGGAATTGTGGTTGCTACCTTCTTGCTGATTGGTATCATATTTGTCCCAATTGGGCTCGCGTCTCTATCTGCATCGCAAGAGATCGTCGAACTGGTGGATCGATATGACACAAATTGTGTGTCCACGCTTGACAAGGTTGGGTTCATTCAGAACACCGATACTGACAAGACATGCACAAGAACACTGACTGTGCCTAAACATATGAAGAGCCCAATCCAGATATATTACCAGATCGGCGACTTCTATCAAAACCATCGACGGTATGTGAAAAGTCGAAGTGATAAACAATTGCGGTATA  AATGCTGTGCACTTGACAAAGGATTGTGATCCTGAAGGTAATACTGTTGATGGTGCTCCAATTATTCCATGTGGCCTTATTGCTTGGAGCTTGTTCAATGATACATATACAATTTCGGTGAACAAGAAGGCCATTGAAGTGAATAAAAAGGATATAGCTTGGAAGAGTGACAAGACCGATAAATTTGGCAGTGATATTTACCCAAGTAATTTTCAGAAGGGCAGTCTAATAGGCGGTGCTAAACTAAATGAGAGCATACCTTTAAGTGAGCAAGAAGACCTCATTGTTTGGATGAGAACCGCTGCCCTCCCAACTTTCAGAAAGCTTTATGGCAGAATCGAGACAGATATTATGGCAAATGATCAATTAACAGTGGTTATACAGAATAACTATAACACATATAGTTTTGGAGGGTCTAAAGCGTTGGTCCTTTCAACTACTTCTTGGATTGGAGGCAAAAACAACTTCATTGGTGTTGCATATCTGACTATCGGAGGCCTATGCATTTTCCTTGCAGTGGGCTTCGTAGTGCTTCTCTACATGGTTAAACCAAGGACTCTTGGAGACCCCTCGTACTTGTCATGGAATAGAGATACTCCAGACCGTCCAAACTAATAGATTGGAATCTCTTTTCTGATATATAAATTTAATAAAGGATCATTTCAATGGGTAAAATGTGAAATTCCTTTACCTGAATCTATGGATGATGTTATGATTCCTATCTAACGTGTTTGTGATAGCCCGATAGGTCCATAGGCATGAGAATACATGAGACAGTGTACTCTGTTGACTCCAATTTTACTTGACAAGAACAGGAGTTGTTCAACTTATTTCTGACTATAAATTAACCCAGA]
[-] EMBL CA758964             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ag  AATGCTGTGCACTTGACAAAGGATTGTGATCCTGAAGGTAATACTGTTGATGGTGCTCCAATTATTCCATGTGGCCTTATTGCTTGGAGCTTGTTCAATGATACATATACAATTTCGGTGAACAAGAAGGCCATTGAAGTGAATAAAAAGGATATAGCTTGGAAGAGTGACAAGACCGATAAATTTGGCAGTGATATTTACCCAAGTAATTTTCAGAAGGGCAGTCTAATAGGCGGTGCTAAACTAAATGAGAGCATACCTTTAAGTAAGCAAGAAGACCTCATTGTTTGGATGAGAACCGCTGCCCTCCCAACTTTCAGAAAGCTTTATGGCAGAATCGAGACAGATATTATGGCAAATGATCAATTAACAGTGGTTATACAGAATAACTATAACACATATAGTTTTGGAGGGTCTAAAGCGTTGGTCCTTTCAACTACTTCTTGGATTGGAGGCAAAAACAACTTCATTGGTGTTGCATATCTGACTATCGGAGGCCTATGCATTTTCCTTGCAGTGGGCTTTGTAGTTCTTCTCTACATGGTTAAACCAAGGACTCTTGGAGACCCCTCGTACTTGTCATGGAATAGAGATACTCCAGACCGTCCAAACTAATAGATTGGAATCTCTTTTCTGATATATAAATTTAATAAAGGATCATTTCAATGGGTAAAA                                                                                                                                                                                   ]


>consensus_4291#0 GCGAATTGGATGTCAAATAATGAAATTTCTCGGTTCTCTCTCTCTCCCACTCTCGCCGTC GCTCTCCGCCATTCTCCACCGCCCACCCACACCGGAGGTCGCCCACCACCGGGGCCTCAC CTCCTCCTCCTCCCCCTCGTCATCAAGCAGAGGGGGTGATCGGGGTCGCCGCGATGGATC CTTTGGAATCTGAAGGTGGCTCACAGAAATCCAACAATAAGCCCAAATATTCTAAGTTTA CGCAACAGGAGCTTCCAGCATGCAAGCCACTACTAACTCCTGGAATTGTGGTTGCTACCT TCTTGCTGATTGGTATCATATTTGTCCCAATTGGGCTCGCGTCTCTATCTGCATCGCAAG AGATCGTCGAACTGGTGGATCGATATGACACAAATTGTGTGTCCACGCTTGACAAGGTTG GGTTCATTCAGAACACCGATACTGACAAGACATGCACAAGAACACTGACTGTGCCTAAAC ATATGAAGAGCCCAATCCAGATATATTACCAGATCGGCGACTTCTATCAAAACCATCGAC GGTATGTGAAAAGTCGAAGTGATAAACAATTGCGGTATAAATGCTGTGCACTTGACAAAG GATTGTGATCCTGAAGGTAATACTGTTGATGGTGCTCCAATTATTCCATGTGGCCTTATT GCTTGGAGCTTGTTCAATGATACATATACAATTTCGGTGAACAAGAAGGCCATTGAAGTG AATAAAAAGGATATAGCTTGGAAGAGTGACAAGACCGATAAATTTGGCAGTGATATTTAC CCAAGTAATTTTCAGAAGGGCAGTCTAATAGGCGGTGCTAAACTAAATGAGAGCATACCT TTAAGTGAGCAAGAAGACCTCATTGTTTGGATGAGAACCGCTGCCCTCCCAACTTTCAGA AAGCTTTATGGCAGAATCGAGACAGATATTATGGCAAATGATCAATTAACAGTGGTTATA CAGAATAACTATAACACATATAGTTTTGGAGGGTCTAAAGCGTTGGTCCTTTCAACTACT TCTTGGATTGGAGGCAAAAACAACTTCATTGGTGTTGCATATCTGACTATCGGAGGCCTA TGCATTTTCCTTGCAGTGGGCTTCGTAGTGCTTCTCTACATGGTTAAACCAAGGACTCTT GGAGACCCCTCGTACTTGTCATGGAATAGAGATACTCCAGACCGTCCAAACTAATAGATT GGAATCTCTTTTCTGATATATAAATTTAATAAAGGATCATTTCAATGGGTAAAATGTGAA ATTCCTTTACCTGAATCTATGGATGATGTTATGATTCCTATCTAACGTGTTTGTGATAGC CCGATAGGTCCATAGGCATGAGAATACATGAGACAGTGTACTCTGTTGACTCCAATTTTA CTTGACAAGAACAGGAGTTGTTCAACTTATTTCTGACTATAAATTAACCCAGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)