These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_43#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [AAAAAACAAAGTGATGTCATGCGTTTTATTTTCCGTATTCGAACATGGCAATATCGTCAAGTAGCTGCCATTCATCGTGCACCAAAACCCACTCGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCTAAAGCTGGCTATGTTGTCTATCGTGTTCGTGTCCGACGTGGTTCACGAAAGAAACCAGTACCAAAAGGTCAAGTCTACGGTAAACCCAAACATCAAGGTATCAATCAATTGAAATTCCAACGTTCATTACAATCCGTTGCCGAAGAACGTGCCGGACGTCGTTTACCTACATTACGTGTTCTTAACTCGTATTGGATTGCACAAGATGCTACCTATAAATTCTACGAAGTTATTCTTGTTGATCCATTTCATACAGGTGTTCGTAATGATCCTCGTATCAATTGGATTTGTCGTGCGAATAAGAAACATCGTGAATTACGAGGTTTAACATCAGCCGGCAAGAAATCTCGTGGACTTGGTCATGGTCATCGTTATTCATTGACCACAGGTGGATCACGTCGAAAATGTTGGAAACGTCGACAACAACTCAGTCTTCGACGATATCGTTAGAAGACTTGAACAAAATCATCAACAACAATATTATTCGAATTCGTTTGATTTCTTGCTTATTCATACTATGATGATTATTATTATTGTTGTTGTTGTTTTGTATTTGTTGAGAAAGAAGAA] [+] EMBL AK062346 [AAAAAACAAAGTGATGTCATGCGTTTTATTTTCCGTATTCGAACATGGCAATATCGTCAAGTAGCTGCCATTCATCGTGCACCAAAACCCACTCGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCTAAAGCTGGCTATGTTGTCTATCGTGTTCGTGTCCGACGTGGTTCACGAAAGAAACCAGTACCAAAAGGTCAAGTCTACGGTAAACCCAAACATCAAGGTATCAATCAATTGAAATTCCAACGTTCATTACAATCCGTTGCCGAAGAACGTGCCGGACGTCGTTTACCTACATTACGTGTTCTTAACTCGTATTGGATTGCACAAGATGCTACCTATAAATTCTACGAAGTTATTCTTGTTGATCCATTTCATACAGGTGTTCGTAATGATCCTCGTATCAATTGGATTTGTCGTGCGAATAAGAAACATCGTGAATTACGAGGTTTAACATCAGCCGGCAAGAAATCTCGTGGACTTGGTCATGGTCATCGTTATTCATTGACCACAGGTGGATCACGTCGAAAATGTTGGAAACGTCGACAACAACTCAGTCTTCGACGATATCGTTAGAAGACTTGAACAAAATCATCAACAACAATATTATTCGAATTCGTTTGATTTCTTGCTTATTCATACTATGATGATTATTATTATTGTTGTTGTTGTTTTGTATTTGTTGAGAAAGAAGAA] consensusID : consensus_43#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [AAGAAAAGAAAAAACCTTGTCCACCTAAGATCATGGGTGCTTATAAATATCTTCAAGAAATCTATCGTAAAAAACAAAGTGATGTTATGCGATTCATTTTTCGTATACGTACATGGCAATATCGACAATTAGCAGCTATACATCGTGCACCGAAATCAACACGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCCAAAGCTGGCTACGTTATCTATCGTGTACGTGTCCGACGTGGTTCACGTAAGAAACCAGTACCAAAAGGTCAAGTTTACGGTAAACCAAAATATCAAGGTATTAATCAATTGAAATTCCAACGTTCATTACAATCGGTTGCCGAAGAACGTGCTGGCCGTCGTTTACCATCATTACGTGTTCTCAATTCGTATTGGATTGCTCAAGATGCCACATATAAATTCTATGAAGTCATCCTTATCGATCCATTTCACAAAGGTGTTCGAACTGATCCACGTATCCATTGGATTTGTCGTGCCAACAAGAAACATCGTGAATTACGAGGCTTAACATCAGCTGGAAAGAAATCTCGAGGACTTGGTCATGGGCATCGTTATTCACTTACAACAGGTGGTTCACGACGAAAATGCTGGGAAC] [+] EMBL CA755939 [AAGAAAAGAAAAAACCTTGTCCACCTAAGATCATGGGTGCTTATAAATATCTTCAAGAAATCTATCGTAAAAAACAAAGTGATGTTATGCGATTCATTTTTCGTATACGTACATGGCAATATCGACAATTAGCAGCTATACATCGTGCACCGAAATCAACACGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCCAAAGCTGGCTACGTTATCTATCGTGTACGTGTCCGACGTGGTTCACGTAAGAAACCAGTACCAAAAGGTCAAGTTTACGGTAAACCAAAATATCAAGGTATTAATCAATTGAAATTCCAACGTTCATTACAATCGGTTGCCGAAGAACGTGCTGGCCGTCGTTTACCATCATTACGTGTTCTCAATTCGTATTGGATTGCTCAAGATGCCACATATAAATTCTATGAAGTCATCCTTATCGATCCATTTCACAAAGGTGTTCGAACTGATCCACGTATCCATTGGATTTGTCGTGCCAACAAGAAACATCGTGAATTACGAGGCTTAACATCAGCTGGAAAGAAATCTCGAGGACTTGGTCATGGGCATCGTTATTCACTTACAACAGGTGGTTCACGACGAAAATGCTGGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_43#0 ------------------------------------------------------------ consensus_43#1 AAGAAAAGAAAAAACCTTGTCCACCTAAGATCATGGGTGCTTATAAATATCTTCAAGAAA 60 consensus_43#0 --------AAAAAACAAAGTGATGTCATGCGTTTTATTTTCCGTATTCGAACATGGCAAT 52 consensus_43#1 TCTATCGTAAAAAACAAAGTGATGTTATGCGATTCATTTTTCGTATACGTACATGGCAAT 120 ***************** ***** ** ***** ***** ** ********** consensus_43#0 ATCGTCAAGTAGCTGCCATTCATCGTGCACCAAAACCCACTCGACCAGAAAAAGCTCGAC 112 consensus_43#1 ATCGACAATTAGCAGCTATACATCGTGCACCGAAATCAACACGACCAGAAAAAGCTCGAC 180 **** *** **** ** ** *********** *** * ** ******************* consensus_43#0 GTGTTGGTTATAAAGCTAAAGCTGGCTATGTTGTCTATCGTGTTCGTGTCCGACGTGGTT 172 consensus_43#1 GTGTTGGTTATAAAGCCAAAGCTGGCTACGTTATCTATCGTGTACGTGTCCGACGTGGTT 240 **************** *********** *** ********** **************** consensus_43#0 CACGAAAGAAACCAGTACCAAAAGGTCAAGTCTACGGTAAACCCAAACATCAAGGTATCA 232 consensus_43#1 CACGTAAGAAACCAGTACCAAAAGGTCAAGTTTACGGTAAACCAAAATATCAAGGTATTA 300 **** ************************** *********** *** ********** * consensus_43#0 ATCAATTGAAATTCCAACGTTCATTACAATCCGTTGCCGAAGAACGTGCCGGACGTCGTT 292 consensus_43#1 ATCAATTGAAATTCCAACGTTCATTACAATCGGTTGCCGAAGAACGTGCTGGCCGTCGTT 360 ******************************* ***************** ** ******* consensus_43#0 TACCTACATTACGTGTTCTTAACTCGTATTGGATTGCACAAGATGCTACCTATAAATTCT 352 consensus_43#1 TACCATCATTACGTGTTCTCAATTCGTATTGGATTGCTCAAGATGCCACATATAAATTCT 420 **** ************* ** ************** ******** ** ********** consensus_43#0 ACGAAGTTATTCTTGTTGATCCATTTCATACAGGTGTTCGTAATGATCCTCGTATCAATT 412 consensus_43#1 ATGAAGTCATCCTTATCGATCCATTTCACAAAGGTGTTCGAACTGATCCACGTATCCATT 480 * ***** ** *** * *********** * ********* * ****** ****** *** consensus_43#0 GGATTTGTCGTGCGAATAAGAAACATCGTGAATTACGAGGTTTAACATCAGCCGGCAAGA 472 consensus_43#1 GGATTTGTCGTGCCAACAAGAAACATCGTGAATTACGAGGCTTAACATCAGCTGGAAAGA 540 ************* ** *********************** *********** ** **** consensus_43#0 AATCTCGTGGACTTGGTCATGGTCATCGTTATTCATTGACCACAGGTGGATCACGTCGAA 532 consensus_43#1 AATCTCGAGGACTTGGTCATGGGCATCGTTATTCACTTACAACAGGTGGTTCACGACGAA 600 ******* ************** ************ * ** ******** ***** **** consensus_43#0 AATGTTGGAAACGTCGACAACAACTCAGTCTTCGACGATATCGTTAGAAGACTTGAACAA 592 consensus_43#1 AATGCTGGGAAC------------------------------------------------ 612 **** *** *** consensus_43#0 AATCATCAACAACAATATTATTCGAATTCGTTTGATTTCTTGCTTATTCATACTATGATG 652 consensus_43#1 ------------------------------------------------------------ consensus_43#0 ATTATTATTATTGTTGTTGTTGTTTTGTATTTGTTGAGAAAGAAGAA 699 consensus_43#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||