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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_43#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[AAAAAACAAAGTGATGTCATGCGTTTTATTTTCCGTATTCGAACATGGCAATATCGTCAAGTAGCTGCCATTCATCGTGCACCAAAACCCACTCGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCTAAAGCTGGCTATGTTGTCTATCGTGTTCGTGTCCGACGTGGTTCACGAAAGAAACCAGTACCAAAAGGTCAAGTCTACGGTAAACCCAAACATCAAGGTATCAATCAATTGAAATTCCAACGTTCATTACAATCCGTTGCCGAAGAACGTGCCGGACGTCGTTTACCTACATTACGTGTTCTTAACTCGTATTGGATTGCACAAGATGCTACCTATAAATTCTACGAAGTTATTCTTGTTGATCCATTTCATACAGGTGTTCGTAATGATCCTCGTATCAATTGGATTTGTCGTGCGAATAAGAAACATCGTGAATTACGAGGTTTAACATCAGCCGGCAAGAAATCTCGTGGACTTGGTCATGGTCATCGTTATTCATTGACCACAGGTGGATCACGTCGAAAATGTTGGAAACGTCGACAACAACTCAGTCTTCGACGATATCGTTAGAAGACTTGAACAAAATCATCAACAACAATATTATTCGAATTCGTTTGATTTCTTGCTTATTCATACTATGATGATTATTATTATTGTTGTTGTTGTTTTGTATTTGTTGAGAAAGAAGAA]
[+] EMBL AK062346 [AAAAAACAAAGTGATGTCATGCGTTTTATTTTCCGTATTCGAACATGGCAATATCGTCAAGTAGCTGCCATTCATCGTGCACCAAAACCCACTCGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCTAAAGCTGGCTATGTTGTCTATCGTGTTCGTGTCCGACGTGGTTCACGAAAGAAACCAGTACCAAAAGGTCAAGTCTACGGTAAACCCAAACATCAAGGTATCAATCAATTGAAATTCCAACGTTCATTACAATCCGTTGCCGAAGAACGTGCCGGACGTCGTTTACCTACATTACGTGTTCTTAACTCGTATTGGATTGCACAAGATGCTACCTATAAATTCTACGAAGTTATTCTTGTTGATCCATTTCATACAGGTGTTCGTAATGATCCTCGTATCAATTGGATTTGTCGTGCGAATAAGAAACATCGTGAATTACGAGGTTTAACATCAGCCGGCAAGAAATCTCGTGGACTTGGTCATGGTCATCGTTATTCATTGACCACAGGTGGATCACGTCGAAAATGTTGGAAACGTCGACAACAACTCAGTCTTCGACGATATCGTTAGAAGACTTGAACAAAATCATCAACAACAATATTATTCGAATTCGTTTGATTTCTTGCTTATTCATACTATGATGATTATTATTATTGTTGTTGTTGTTTTGTATTTGTTGAGAAAGAAGAA]
consensusID : consensus_43#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[AAGAAAAGAAAAAACCTTGTCCACCTAAGATCATGGGTGCTTATAAATATCTTCAAGAAATCTATCGTAAAAAACAAAGTGATGTTATGCGATTCATTTTTCGTATACGTACATGGCAATATCGACAATTAGCAGCTATACATCGTGCACCGAAATCAACACGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCCAAAGCTGGCTACGTTATCTATCGTGTACGTGTCCGACGTGGTTCACGTAAGAAACCAGTACCAAAAGGTCAAGTTTACGGTAAACCAAAATATCAAGGTATTAATCAATTGAAATTCCAACGTTCATTACAATCGGTTGCCGAAGAACGTGCTGGCCGTCGTTTACCATCATTACGTGTTCTCAATTCGTATTGGATTGCTCAAGATGCCACATATAAATTCTATGAAGTCATCCTTATCGATCCATTTCACAAAGGTGTTCGAACTGATCCACGTATCCATTGGATTTGTCGTGCCAACAAGAAACATCGTGAATTACGAGGCTTAACATCAGCTGGAAAGAAATCTCGAGGACTTGGTCATGGGCATCGTTATTCACTTACAACAGGTGGTTCACGACGAAAATGCTGGGAAC]
[+] EMBL CA755939 [AAGAAAAGAAAAAACCTTGTCCACCTAAGATCATGGGTGCTTATAAATATCTTCAAGAAATCTATCGTAAAAAACAAAGTGATGTTATGCGATTCATTTTTCGTATACGTACATGGCAATATCGACAATTAGCAGCTATACATCGTGCACCGAAATCAACACGACCAGAAAAAGCTCGACGTGTTGGTTATAAAGCCAAAGCTGGCTACGTTATCTATCGTGTACGTGTCCGACGTGGTTCACGTAAGAAACCAGTACCAAAAGGTCAAGTTTACGGTAAACCAAAATATCAAGGTATTAATCAATTGAAATTCCAACGTTCATTACAATCGGTTGCCGAAGAACGTGCTGGCCGTCGTTTACCATCATTACGTGTTCTCAATTCGTATTGGATTGCTCAAGATGCCACATATAAATTCTATGAAGTCATCCTTATCGATCCATTTCACAAAGGTGTTCGAACTGATCCACGTATCCATTGGATTTGTCGTGCCAACAAGAAACATCGTGAATTACGAGGCTTAACATCAGCTGGAAAGAAATCTCGAGGACTTGGTCATGGGCATCGTTATTCACTTACAACAGGTGGTTCACGACGAAAATGCTGGGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_43#0 ------------------------------------------------------------
consensus_43#1 AAGAAAAGAAAAAACCTTGTCCACCTAAGATCATGGGTGCTTATAAATATCTTCAAGAAA 60
consensus_43#0 --------AAAAAACAAAGTGATGTCATGCGTTTTATTTTCCGTATTCGAACATGGCAAT 52
consensus_43#1 TCTATCGTAAAAAACAAAGTGATGTTATGCGATTCATTTTTCGTATACGTACATGGCAAT 120
***************** ***** ** ***** ***** ** **********
consensus_43#0 ATCGTCAAGTAGCTGCCATTCATCGTGCACCAAAACCCACTCGACCAGAAAAAGCTCGAC 112
consensus_43#1 ATCGACAATTAGCAGCTATACATCGTGCACCGAAATCAACACGACCAGAAAAAGCTCGAC 180
**** *** **** ** ** *********** *** * ** *******************
consensus_43#0 GTGTTGGTTATAAAGCTAAAGCTGGCTATGTTGTCTATCGTGTTCGTGTCCGACGTGGTT 172
consensus_43#1 GTGTTGGTTATAAAGCCAAAGCTGGCTACGTTATCTATCGTGTACGTGTCCGACGTGGTT 240
**************** *********** *** ********** ****************
consensus_43#0 CACGAAAGAAACCAGTACCAAAAGGTCAAGTCTACGGTAAACCCAAACATCAAGGTATCA 232
consensus_43#1 CACGTAAGAAACCAGTACCAAAAGGTCAAGTTTACGGTAAACCAAAATATCAAGGTATTA 300
**** ************************** *********** *** ********** *
consensus_43#0 ATCAATTGAAATTCCAACGTTCATTACAATCCGTTGCCGAAGAACGTGCCGGACGTCGTT 292
consensus_43#1 ATCAATTGAAATTCCAACGTTCATTACAATCGGTTGCCGAAGAACGTGCTGGCCGTCGTT 360
******************************* ***************** ** *******
consensus_43#0 TACCTACATTACGTGTTCTTAACTCGTATTGGATTGCACAAGATGCTACCTATAAATTCT 352
consensus_43#1 TACCATCATTACGTGTTCTCAATTCGTATTGGATTGCTCAAGATGCCACATATAAATTCT 420
**** ************* ** ************** ******** ** **********
consensus_43#0 ACGAAGTTATTCTTGTTGATCCATTTCATACAGGTGTTCGTAATGATCCTCGTATCAATT 412
consensus_43#1 ATGAAGTCATCCTTATCGATCCATTTCACAAAGGTGTTCGAACTGATCCACGTATCCATT 480
* ***** ** *** * *********** * ********* * ****** ****** ***
consensus_43#0 GGATTTGTCGTGCGAATAAGAAACATCGTGAATTACGAGGTTTAACATCAGCCGGCAAGA 472
consensus_43#1 GGATTTGTCGTGCCAACAAGAAACATCGTGAATTACGAGGCTTAACATCAGCTGGAAAGA 540
************* ** *********************** *********** ** ****
consensus_43#0 AATCTCGTGGACTTGGTCATGGTCATCGTTATTCATTGACCACAGGTGGATCACGTCGAA 532
consensus_43#1 AATCTCGAGGACTTGGTCATGGGCATCGTTATTCACTTACAACAGGTGGTTCACGACGAA 600
******* ************** ************ * ** ******** ***** ****
consensus_43#0 AATGTTGGAAACGTCGACAACAACTCAGTCTTCGACGATATCGTTAGAAGACTTGAACAA 592
consensus_43#1 AATGCTGGGAAC------------------------------------------------ 612
**** *** ***
consensus_43#0 AATCATCAACAACAATATTATTCGAATTCGTTTGATTTCTTGCTTATTCATACTATGATG 652
consensus_43#1 ------------------------------------------------------------
consensus_43#0 ATTATTATTATTGTTGTTGTTGTTTTGTATTTGTTGAGAAAGAAGAA 699
consensus_43#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||