cluster # 4300

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Oryza sativa
cluster # 4300 cluster # 4300 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4300#0 length = 765 sequences # 1

consensus_4300#1 length = 572 sequences # 2

consensusID : consensus_4300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGCTAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCACTAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGCGCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCTGCCGGTGTCCATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCACCGGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCCCGACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG]

[+] EMBL AK108811             [CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGCTAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCACTAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGCGCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCTGCCGGTGTCCATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCACCGGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCCCGACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG]




>consensus_4300#0
CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGC
TAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCAC
TAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAA
GCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCC
CGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCG
GTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTC
GTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACG
CTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGC
GCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGG
AAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCTGCCGGTGTCC
ATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCACC
GGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCCC
GACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG

consensusID : consensus_4300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 572
fasta sequence

                              [TTTTTTTTTACCATTCAAATCAATATACT-GGTTTA--TATTTATAGATGTCATCGATTAATGAATGAAATGTACTTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAATTATATATGAGCAGGGGGTGAGAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCACGAGGCCCCGCCGGCGGCGCCGGCGTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCGTGCTGCGCGAGGCTTGCCGGTGTC]

[-] EMBL BI813530             [TTTTTTTTTACCATTCAAATCAATATACT GGTTTA  TATTTATAGATGTCATCGATTAATGAATGAAATGTACTTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAATTATATATGAGCAGGGGGTGAGAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCACGAGGCCCCGCCGGCGGCGCCGGCGTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCGTGCTGCGCGAGGCTTGCCGGTGTC]
[-] EMBL BI813551             [TTTTTTTTTACCATTCAAATCAATATACTGGGTTTAATTATTTTAAGATGTCATCGATTAATGAATGAAA GTA TTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAATTATATATGAGCA GGGGTGAG ATATCTGGAGAACAAG                                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_4300#1
TTTTTTTTTACCATTCAAATCAATATACTGGTTTATATTTATAGATGTCATCGATTAATG
AATGAAATGTACTTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAAT
TATATATGAGCAGGGGGTGAGAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGT
GAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCT
GCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTG
CATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCT
CGCCCTCCACACGAGCTGGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGC
ACGATGGAGCTCCGCACGAGGCCCCGCCGGCGGCGCCGGCGTTGCTCCGCCTGCTTCGAG
ACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAG
CTGCACCGTGCTGCGCGAGGCTTGCCGGTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4300#0      CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGC 60
consensus_4300#1      ---TTTTTTTTTACCATTCAAATCAATATACTGGT--TTATATTTATAGATGTCATCGAT 55
                         *      ** *     *  **    *  ****  *  **      * * *       

consensus_4300#0      TAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCAC 120
consensus_4300#1      TAAT--GAATGAAATGTACTTT-----ATATATACATGTAGCTAGAATCATACATG--GA 106
                      ** *  ** *   ** ******     ** * ****   *  *   *  **** **    

consensus_4300#0      TAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAA 180
consensus_4300#1      TATATATCTACAATT--------ATATA-TGAGCAGGGGGTGAGAATATCTGGAGAACAA 157
                      **   * ****  *         ***** ***  ********* ****************

consensus_4300#0      GCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCC 240
consensus_4300#1      GCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCC 217
                      ************************************************************

consensus_4300#0      CGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCG 300
consensus_4300#1      CGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCG 277
                      ************************************************************

consensus_4300#0      GTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTC 360
consensus_4300#1      GTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTC 337
                      ************************************************************

consensus_4300#0      GTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACG 420
consensus_4300#1      GTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTG-GCCCTCGCGACGCCCACG 396
                      ***************************************** ******************

consensus_4300#0      CTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGC 480
consensus_4300#1      CTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGC-ACGAGGCCCC-GCCGGCGGC 454
                      *************************************** ********** *********

consensus_4300#0      GCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGG 540
consensus_4300#1      GCCGGCGTT-GCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGG 513
                      ********* **************************************************

consensus_4300#0      AAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCT-GCCGGTGTC 599
consensus_4300#1      AAGACCGGCAAGGGCGAGCACCCGAAGCTGCACC-GTGCTGCGCGAGGCTTGCCGGTGTC 572
                      ********************************** *************** *********

consensus_4300#0      CATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCAC 659
consensus_4300#1      ------------------------------------------------------------
                                                                                  

consensus_4300#0      CGGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCC 719
consensus_4300#1      ------------------------------------------------------------
                                                                                  

consensus_4300#0      CGACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG 765
consensus_4300#1      ----------------------------------------------