cluster # 4312

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Oryza sativa
cluster # 4312 cluster # 4312 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4312#0 length = 1725 sequences # 1

consensus_4312#1 length = 275 sequences # 2

consensusID : consensus_4312#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1725
fasta sequence

                              [TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGGAACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAGAGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGGCACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAACGCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTCTACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCACCTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTCCATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAGATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTCGCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTAGTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTCACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATTAAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTTGCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATGACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTTGCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAGAATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGGAAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTCCACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCTAATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGCAGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTGGGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAGGGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAAAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCCTTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACACTGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG]

[+] EMBL AK071206             [TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGGAACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAGAGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGGCACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAACGCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTCTACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCACCTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTCCATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAGATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTCGCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTAGTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTCACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATTAAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTTGCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATGACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTTGCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAGAATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGGAAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTCCACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCTAATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGCAGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTGGGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAGGGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAAAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCCTTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACACTGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG]




>consensus_4312#0
TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGG
AACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAG
AGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGG
CACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAAC
GCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTC
TACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCAC
CTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTC
CATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAG
ATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTC
GCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTA
GTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTC
ACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATT
AAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTT
GCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATG
ACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTT
GCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAG
AATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGG
AAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTC
CACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCT
AATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGC
AGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTG
GGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAG
GGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAA
AATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTG
TATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGG
AGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAG
ACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCC
TTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACAC
TGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG

consensusID : consensus_4312#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 275
fasta sequence

                              [AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA754883             [AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA754836             [AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCANAGACTGATCCTCAna                                                                                 ]




>consensus_4312#1
AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTT
GTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTG
GAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAA
GACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4312#0      TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGG 60
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAG 120
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGG 180
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      CACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAAC 240
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTC 300
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      TACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCAC 360
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      CTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTC 420
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      CATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAG 480
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      ATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTC 540
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTA 600
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTC 660
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      ACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATT 720
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTT 780
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATG 840
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      ACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTT 900
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAG 960
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGG 1020
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTC 1080
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      CACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCT 1140
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGC 1200
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      AGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTG 1260
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAG 1320
consensus_4312#1      ------------------------------------------------------------
                                                                                  

consensus_4312#0      GGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAA 1380
consensus_4312#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_4312#0      AATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTG 1440
consensus_4312#1      AATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTG 61
                      ************************************************************

consensus_4312#0      TATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGG 1500
consensus_4312#1      TATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGG 121
                      ************************************************************

consensus_4312#0      AGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAG 1560
consensus_4312#1      AGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAG 181
                      ************************************************************

consensus_4312#0      ACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCC 1620
consensus_4312#1      ACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAAA 241
                      **********************************************      *   *   

consensus_4312#0      TTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACAC 1680
consensus_4312#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 275
                           * *   ** **   **  *                                    

consensus_4312#0      TGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG 1725
consensus_4312#1      ---------------------------------------------