These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGTTCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCTTCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCCCCTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA] [+] EMBL BI801072 [ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGTTCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCTTCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCCCCTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA] consensusID : consensus_4322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AGACAGGTCGCCTTCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC] [+] EMBL CF322704 [AGACAGGTCGCCTTCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC] consensusID : consensus_4322#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [AGAGGACGAGACAAGGGGGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGTTGAATCATATCTTATTTCTTCTAAAAAAAAAAAAA] [-] EMBL CA760682 [AGAGGACGAGACAAGGGGGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGTTGAATCATATCTTATTTCTTCTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4322#0 ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGT 60 consensus_4322#1 ------------------------------------------------------------ consensus_4322#2 ------------------------------------------------------------ consensus_4322#0 TCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCT 120 consensus_4322#1 ----------------------------------------------AGACA-GGTCGCCT 13 consensus_4322#2 ------------------------------------------------------------ consensus_4322#0 TCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTC 180 consensus_4322#1 TCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTC 73 consensus_4322#2 ------------------------------------------------------------ consensus_4322#0 GCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCAT 240 consensus_4322#1 GCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGGCGGCCAT 133 consensus_4322#2 ------------------------------------------------------------ consensus_4322#0 CGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGG 300 consensus_4322#1 CGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGG 193 consensus_4322#2 ------------------------------------------------------------ consensus_4322#0 CTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGC 360 consensus_4322#1 CTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGC 253 consensus_4322#2 ------------------------------------------------------------ consensus_4322#0 CCTCGCCTGGAGCTTCTCGATGTGT-CAGCTGCTGGGATTTGTGTGTCGACGACGACGCC 419 consensus_4322#1 CCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGTCGACGACGACGCC 313 consensus_4322#2 --------------AGAGGACGAGACAAGGGG--GGGATTTGTGTGTCGACGACGACGCC 44 ** * * ** * ************************** consensus_4322#0 CAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGAT 479 consensus_4322#1 CAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGAT 373 consensus_4322#2 CAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGAT 104 ************************************************************ consensus_4322#0 GATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCG 539 consensus_4322#1 GATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCG 433 consensus_4322#2 GATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCG 164 ************************************************************ consensus_4322#0 ATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCC 599 consensus_4322#1 ATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCA 493 consensus_4322#2 ATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCA 224 *************************************************** ******* consensus_4322#0 CCTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA--- 643 consensus_4322#1 CCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC--- 537 consensus_4322#2 CCTTAATTTGGTTGAATCATATCTTATTTCTTCTAAAAAAAAAAAAA 271 *********** ******************* ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||