These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGACGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGCGGCGGCGAGAGGGGATGGGTGGAGCATGCTGTCCCGCGCCCGAGTCCTGCTCGAGGAGGGCAAGCCGTCGCTCGCGCTGCAGGCGATTCTCTTGGCCATAAGATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACTCTACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACAATGTGCTATAGCAGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGACCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCAGATAATTTTAGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTAGCACCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066467 [TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGACGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGCGGCGGCGAGAGGGGATGGGTGGAGCATGCTGTCCCGCGCCCGAGTCCTGCTCGAGGAGGGCAAGCCGTCGCTCGCGCTGCAGGCGATTCTCTTGGCCATAAGATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACTCTACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACAATGTGCTATAGCAGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGACCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCAGATAATTTTAGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTAGCACCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTAT ] [+] EMBL AU101536 [ GATAATTTTNGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTNGCNCCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTNCCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGNGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGACGTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGATTTCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCCATAAAGATCCCCAAGGGTTGGTTAAACCAGGGCTCCTCATTCCCGAACCCCCGAAACCCGTTGCCACCGGGGAAACC] [+] EMBL CA753238 [TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGACGTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGATTTCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCCATAAAGATCCCCAAGGGTTGGTTAAACCAGGGCTCCTCATTCCCGAACCCCCGAAACCCGTTGCCACCGGGGAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4326#0 TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATC 60 consensus_4326#1 -TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATC 59 *********************************************************** consensus_4326#0 ATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGA 120 consensus_4326#1 ATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGA 119 ************************************************************ consensus_4326#0 TCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGA 180 consensus_4326#1 TCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGA 179 *************************************************** ******** consensus_4326#0 CGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGC 240 consensus_4326#1 CGTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGC 239 **************** ******************************************* consensus_4326#0 TGCGGCGGCGG---CGGCGGCGAGAGGGGATGGGTGGAGCATGC-TGTCCCGCGCCCGAG 296 consensus_4326#1 TGCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGAT 299 *********** * ** ************************* ****** * ***** consensus_4326#0 TCCTG-CTCGAGGAGGGCAAGCCGTCGCTCG--CGCTGCAGGC--GATTCTCTTGG--CC 349 consensus_4326#1 TTCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCC 359 * * * *** **** *** * ** ** ** * * *** ** * ******* ** consensus_4326#0 ATAA-GATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACT 408 consensus_4326#1 ATAAAGATCCCCAAGGGTTGGTTAAAC---CAGGGCTCCTCATTCCCGAACCCCCGAAAC 416 **** ****** * * * ** * * ** * * * *** * * *** consensus_4326#0 CTACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACA 468 consensus_4326#1 CCGTTGCCACCGGGGAAACC---------------------------------------- 436 * * ** * * * * consensus_4326#0 ATGTGCTATAGCAGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGA 528 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 CCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCA 588 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 GATAATTTTAGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCT 648 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 GTTTAGCACCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTG 708 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 GCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATT 768 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 TTGATCTTCTGTTACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAG 828 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 CTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAA 888 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 TCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 942 consensus_4326#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||