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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1594 fasta sequence
[AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAAATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGGGCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCCAAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGCGTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACTGACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACTGATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAAGTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATTAACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGTGTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCATGTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAAGGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCC-TTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGCATACAAAGGTCACTGGCTTCTTCAATATACAATT]
[+] EMBL AK102353 [AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAAATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGGGCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCCAAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGCGTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACTGACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACTGATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAAGTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATTAACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGTGTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCATGTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAAGGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCC TTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGCATACAAAGGTCACTGGCTTCTTCAATATACAATT]
[+] EMBL AU101572 [ GTTCATTTCACTCCTCAAGTAAACCAAGGACTACCACCTGCAGTTCAAACAAATACATCTACTT TGTGCCTCTTTTGGGTGGANTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCCTTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTA ]
consensusID : consensus_4329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTGNNNNNTNGGAAAAAAAAAAAAAAAAA]
[+] EMBL AU101573 [TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTGNNNNNTNGGAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4329#0 AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAA 60
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 ATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGG 120
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCC 180
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 AAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGG 240
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 TCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGC 300
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACT 360
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACT 420
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAA 480
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATT 540
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 AACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGT 600
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCAT 660
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAA 720
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTT 780
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 AGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAA 840
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GCAAACACATCTACCCATTTGCCTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTT 900
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 ACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCAT 960
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAA 1020
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGA 1080
consensus_4329#1 ------------------------------------------------------------
consensus_4329#0 GTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT 1140
consensus_4329#1 --------------TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT 46
**********************************************
consensus_4329#0 GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT- 1199
consensus_4329#1 GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTT 106
***********************************************************
consensus_4329#0 GCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCA 1259
consensus_4329#1 GCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCA 166
*********************************************** ************
consensus_4329#0 AACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAT 1319
consensus_4329#1 AACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAT 226
************************************************************
consensus_4329#0 GACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTA 1379
consensus_4329#1 GACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTA 286
************************************************************
consensus_4329#0 TAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTA 1439
consensus_4329#1 TAGCAGTGTGAGATTAAGTGCC-TGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTA 345
********************** *************************************
consensus_4329#0 ACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGG 1499
consensus_4329#1 ACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGG 405
************************************************************
consensus_4329#0 GATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTG 1559
consensus_4329#1 GATATTATGGCCNTGNNNNN-TNGGAAAAAAAAAAAAAAAAA------------------ 446
************ * * ***** * **
consensus_4329#0 CATACAAAGGTCACTGGCTTCTTCAATATACAATT 1594
consensus_4329#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||