These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1466 fasta sequence [CAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAATCCGGGCGATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCCGCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCCGGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACCATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCCCCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCCAAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAGGGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTCCCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACCGCTGGCTCGAGTCCAAGGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAAGTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGACGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCCAGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGACGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACACGGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGAGACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGGCGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTCGGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAGGGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAGAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTAATTATTTGCTACCGAGAT] [+] EMBL AK070817 [CAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAATCCGGGCGATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCCGCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCCGGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACCATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCCCCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCCAAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAGGGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTCCCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACCGCTGGCTCGAGTCCAAGGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAAGTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGACGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCCAGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGACGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACACGGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGAGACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGGCGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTCGGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAGGGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAGAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTAATTATTTGCTACCGAGAT] consensusID : consensus_4334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA754708 [CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_4334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCNTTANNAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754734 [CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCNTTANNAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 CAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAATCCGGGCG 60 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 ATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCC 120 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCC 180 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACC 240 consensus_4334#1 ---------------------------CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCG 33 consensus_4334#2 ---------------------------CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCG 33 consensus_4334#0 ATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCC 300 * * ** * * ** * ** * consensus_4334#1 GCCGCGAGAGCCGCCACGACGA-GGCTGCCCCGGTGGTTGACTCGC-CGCCGGCGTC-CC 90 consensus_4334#2 GCCGCGAGAGCCGCCACGACGA-GGCTGCCCCGGTGGTTGACTCGC-CGCCGGCGTC-CC 90 consensus_4334#0 CCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCC 360 *** *** ** * * * ** * ***** ** * ** ** ******* ** consensus_4334#1 ATTCCAATTCCCTTGTCTA-GTCGTCTATCTCATCTATT-CTAACTTCAAATCAAACAAA 148 consensus_4334#2 ATTCCAATTCCCTTGTCTA-GTCGTCTATCTCATCTATT-CTAACTTCAAATCAAACAAA 148 consensus_4334#0 AAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAG 420 * ** * * **** * * * ** ** ** * * * * * consensus_4334#1 AAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT 208 consensus_4334#2 AAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT 208 consensus_4334#0 GGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTC 480 * * **** **** * * ** * * * ** * * * * consensus_4334#1 TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGG 268 consensus_4334#2 TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGG 268 consensus_4334#0 CCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACC--GCTGGCTCGA--GTCCAA 536 * * ** * ** * ** * * * * * ****** * * consensus_4334#1 AGTCAGGTACC------GTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGC 322 consensus_4334#2 AGTCAGGTACC------GTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGC 322 consensus_4334#0 GGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAA 596 * *** * ** * * * * * *** * * * * consensus_4334#1 -TACTCCTTTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 381 consensus_4334#2 -TACTCCTTTTGTCCNTTANNAAAAAAAAAAAAAAAAAAAAAAA---------------- 365 consensus_4334#0 GTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGA 656 *** *** * * consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 441 consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 CGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCC 716 consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 501 consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 AGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGA 776 consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 561 consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 CGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACAC 836 consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------- 602 consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGA 896 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGG 956 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 CGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTC 1016 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAG 1076 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTT 1136 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 CGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTC 1196 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 CCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAA 1256 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 GAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT 1316 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGG 1376 consensus_4334#1 ------------------------------------------------------------ consensus_4334#2 ------------------------------------------------------------ consensus_4334#0 AGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCC 1436 consensus_4334#1 ------------------------------ consensus_4334#2 ------------------------------ consensus_4334#0 TTTTGTCCATTAATTATTTGCTACCGAGAT 1466 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||