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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1044 fasta sequence
[ATCAGCACTTCAATTAATGAAACTTGTTCATGGAGCCCTGAAGTGCAGGATGCTTGTTTGTCATCCGCAAGAGTTGCAAAGGAGTTATGCTATGCTGCTAGGGACGCCTTACTCTTGTACAAGGCTATTGTGCCAGTTCAGCTAGAGAAGCAACTCGATAGTATCAATCAAGTAGCTGCCATTATTCACAACGACTTCTACCATTTGTCCCAAGAAATTCTTGGTCTTGCATTTGAGTACCGTGCAGATTTTCCTGGTGACCTACAGAAACTAGTTGTTTTTGTGGATTTAGCCCCAACCTTCTCTCAGATGGCAGATGGTGTACTTACAAGGCAAATCCAGCTTGTTACTGCAAACTTAATAGAGGCTATAGATGGCGCTGATGGTTTTCAGAATACACACCAACCTCAGCATTATGAATCAGCAAAATTCAGTATTGAGCAGGTTGTGTTCATTTTAGAAAAAATACACATTATGTGGGAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCCTGGATCTGTCTTTTCTAGAATTACAAAAGATATGCTCCTAATAGATGACATGGCAGCAGAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCACTTACTTTCATGGATAGTATGGACTATGGGGGTTTCAC]
[+] EMBL AK058845 [ATCAGCACTTCAATTAATGAAACTTGTTCATGGAGCCCTGAAGTGCAGGATGCTTGTTTGTCATCCGCAAGAGTTGCAAAGGAGTTATGCTATGCTGCTAGGGACGCCTTACTCTTGTACAAGGCTATTGTGCCAGTTCAGCTAGAGAAGCAACTCGATAGTATCAATCAAGTAGCTGCCATTATTCACAACGACTTCTACCATTTGTCCCAAGAAATTCTTGGTCTTGCATTTGAGTACCGTGCAGATTTTCCTGGTGACCTACAGAAACTAGTTGTTTTTGTGGATTTAGCCCCAACCTTCTCTCAGATGGCAGATGGTGTACTTACAAGGCAAATCCAGCTTGTTACTGCAAACTTAATAGAGGCTATAGATGGCGCTGATGGTTTTCAGAATACACACCAACCTCAGCATTATGAATCAGCAAAATTCAGTATTGAGCAGGTTGTGTTCATTTTAGAAAAAATACACATTATGTGGGAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCCTGGATCTGTCTTTTCTAGAATTACAAAAGATATGCTCCTAATAGATGACATGGCAGCAGAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCACTTACTTTCATGGATAGTATGGACTATGGGG ]
[+] EMBL CB096514 [ TCCTTGGATCTGTCTTTTCTAGAATTACAAAAGATATGCTCCTAATAGATGACATGGCAGCAGAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTTACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCATGGATAGTATGGACTATGGGGGTTTCAC]
consensusID : consensus_4339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[TGGCGGACGCGTGGCCGGACGCGTGGCGGACGCGTGGGTTTACAAGAGAAAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCATGGATAGTATGGACTATGGGGGTTTCACTCGAAAAAAA]
[+] EMBL BI804012 [TGGCGGACGCGTGGCCGGACGCGTGGCGGACGCGTGGGTTTACAAGAGAAAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCATGGATAGTATGGACTATGGGGGTTTCACTCGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4339#0 ATCAGCACTTCAATTAATGAAACTTGTTCATGGAGCCCTGAAGTGCAGGATGCTTGTTTG 60
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 TCATCCGCAAGAGTTGCAAAGGAGTTATGCTATGCTGCTAGGGACGCCTTACTCTTGTAC 120
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 AAGGCTATTGTGCCAGTTCAGCTAGAGAAGCAACTCGATAGTATCAATCAAGTAGCTGCC 180
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 ATTATTCACAACGACTTCTACCATTTGTCCCAAGAAATTCTTGGTCTTGCATTTGAGTAC 240
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 CGTGCAGATTTTCCTGGTGACCTACAGAAACTAGTTGTTTTTGTGGATTTAGCCCCAACC 300
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 TTCTCTCAGATGGCAGATGGTGTACTTACAAGGCAAATCCAGCTTGTTACTGCAAACTTA 360
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 ATAGAGGCTATAGATGGCGCTGATGGTTTTCAGAATACACACCAACCTCAGCATTATGAA 420
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 TCAGCAAAATTCAGTATTGAGCAGGTTGTGTTCATTTTAGAAAAAATACACATTATGTGG 480
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 GAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCCTGGATCTGTC 540
consensus_4339#1 ------------------------------------------------------------
consensus_4339#0 TTTTCTAGAATTACAAA-AGATATGCTCCTAATAGATGACATGGCAGCAGA--GGAGACA 597
consensus_4339#1 --TGGCGGACGCGTGGCCGGACGCGTGGCGGACGCGTGGGTTTACAAGAGAAAGGAGACA 58
* ** ** * * * ** * ** *** *******
consensus_4339#0 TTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCC 657
consensus_4339#1 TTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCC 118
************************************************************
consensus_4339#0 CTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGA 717
consensus_4339#1 CTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGA 178
************************************************************
consensus_4339#0 CCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACG 777
consensus_4339#1 CCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACG 238
************************************************************
consensus_4339#0 GCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAAT 837
consensus_4339#1 GCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAAT 298
************************************************************
consensus_4339#0 TTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCT 897
consensus_4339#1 TTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCT 358
************************************************************
consensus_4339#0 AGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCAT 957
consensus_4339#1 AGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCAT 418
************************************************************
consensus_4339#0 CTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCACTTACTTTCAT 1017
consensus_4339#1 CTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCAT 478
************************************************* **********
consensus_4339#0 GGATAGTATGGACTATGGGGGTTTCAC---------- 1044
consensus_4339#1 GGATAGTATGGACTATGGGGGTTTCACTCGAAAAAAA 515
***************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||