These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1044 fasta sequence [ATCAGCACTTCAATTAATGAAACTTGTTCATGGAGCCCTGAAGTGCAGGATGCTTGTTTGTCATCCGCAAGAGTTGCAAAGGAGTTATGCTATGCTGCTAGGGACGCCTTACTCTTGTACAAGGCTATTGTGCCAGTTCAGCTAGAGAAGCAACTCGATAGTATCAATCAAGTAGCTGCCATTATTCACAACGACTTCTACCATTTGTCCCAAGAAATTCTTGGTCTTGCATTTGAGTACCGTGCAGATTTTCCTGGTGACCTACAGAAACTAGTTGTTTTTGTGGATTTAGCCCCAACCTTCTCTCAGATGGCAGATGGTGTACTTACAAGGCAAATCCAGCTTGTTACTGCAAACTTAATAGAGGCTATAGATGGCGCTGATGGTTTTCAGAATACACACCAACCTCAGCATTATGAATCAGCAAAATTCAGTATTGAGCAGGTTGTGTTCATTTTAGAAAAAATACACATTATGTGGGAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCCTGGATCTGTCTTTTCTAGAATTACAAAAGATATGCTCCTAATAGATGACATGGCAGCAGAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCACTTACTTTCATGGATAGTATGGACTATGGGGGTTTCAC] [+] EMBL AK058845 [ATCAGCACTTCAATTAATGAAACTTGTTCATGGAGCCCTGAAGTGCAGGATGCTTGTTTGTCATCCGCAAGAGTTGCAAAGGAGTTATGCTATGCTGCTAGGGACGCCTTACTCTTGTACAAGGCTATTGTGCCAGTTCAGCTAGAGAAGCAACTCGATAGTATCAATCAAGTAGCTGCCATTATTCACAACGACTTCTACCATTTGTCCCAAGAAATTCTTGGTCTTGCATTTGAGTACCGTGCAGATTTTCCTGGTGACCTACAGAAACTAGTTGTTTTTGTGGATTTAGCCCCAACCTTCTCTCAGATGGCAGATGGTGTACTTACAAGGCAAATCCAGCTTGTTACTGCAAACTTAATAGAGGCTATAGATGGCGCTGATGGTTTTCAGAATACACACCAACCTCAGCATTATGAATCAGCAAAATTCAGTATTGAGCAGGTTGTGTTCATTTTAGAAAAAATACACATTATGTGGGAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCCTGGATCTGTCTTTTCTAGAATTACAAAAGATATGCTCCTAATAGATGACATGGCAGCAGAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCACTTACTTTCATGGATAGTATGGACTATGGGG ] [+] EMBL CB096514 [ TCCTTGGATCTGTCTTTTCTAGAATTACAAAAGATATGCTCCTAATAGATGACATGGCAGCAGAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTTACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCATGGATAGTATGGACTATGGGGGTTTCAC] consensusID : consensus_4339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TGGCGGACGCGTGGCCGGACGCGTGGCGGACGCGTGGGTTTACAAGAGAAAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCATGGATAGTATGGACTATGGGGGTTTCACTCGAAAAAAA] [+] EMBL BI804012 [TGGCGGACGCGTGGCCGGACGCGTGGCGGACGCGTGGGTTTACAAGAGAAAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCATCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCATGGATAGTATGGACTATGGGGGTTTCACTCGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4339#0 ATCAGCACTTCAATTAATGAAACTTGTTCATGGAGCCCTGAAGTGCAGGATGCTTGTTTG 60 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 TCATCCGCAAGAGTTGCAAAGGAGTTATGCTATGCTGCTAGGGACGCCTTACTCTTGTAC 120 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 AAGGCTATTGTGCCAGTTCAGCTAGAGAAGCAACTCGATAGTATCAATCAAGTAGCTGCC 180 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 ATTATTCACAACGACTTCTACCATTTGTCCCAAGAAATTCTTGGTCTTGCATTTGAGTAC 240 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 CGTGCAGATTTTCCTGGTGACCTACAGAAACTAGTTGTTTTTGTGGATTTAGCCCCAACC 300 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 TTCTCTCAGATGGCAGATGGTGTACTTACAAGGCAAATCCAGCTTGTTACTGCAAACTTA 360 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 ATAGAGGCTATAGATGGCGCTGATGGTTTTCAGAATACACACCAACCTCAGCATTATGAA 420 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 TCAGCAAAATTCAGTATTGAGCAGGTTGTGTTCATTTTAGAAAAAATACACATTATGTGG 480 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 GAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCCTGGATCTGTC 540 consensus_4339#1 ------------------------------------------------------------ consensus_4339#0 TTTTCTAGAATTACAAA-AGATATGCTCCTAATAGATGACATGGCAGCAGA--GGAGACA 597 consensus_4339#1 --TGGCGGACGCGTGGCCGGACGCGTGGCGGACGCGTGGGTTTACAAGAGAAAGGAGACA 58 * ** ** * * * ** * ** *** ******* consensus_4339#0 TTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCC 657 consensus_4339#1 TTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAACCTCTCATCACTATTTCTGTCC 118 ************************************************************ consensus_4339#0 CTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGA 717 consensus_4339#1 CTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACGA 178 ************************************************************ consensus_4339#0 CCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACG 777 consensus_4339#1 CCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACG 238 ************************************************************ consensus_4339#0 GCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAAT 837 consensus_4339#1 GCCGCTTGGGAAAGTGGGGAGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAAT 298 ************************************************************ consensus_4339#0 TTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCT 897 consensus_4339#1 TTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAGGAGTGCCTATTATGGATTTCT 358 ************************************************************ consensus_4339#0 AGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCAT 957 consensus_4339#1 AGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTCACTGATTCATTAGGCAT 418 ************************************************************ consensus_4339#0 CTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCACTTACTTTCAT 1017 consensus_4339#1 CTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCATTTACTTTCAT 478 ************************************************* ********** consensus_4339#0 GGATAGTATGGACTATGGGGGTTTCAC---------- 1044 consensus_4339#1 GGATAGTATGGACTATGGGGGTTTCACTCGAAAAAAA 515 *************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||