cluster # 434

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Oryza sativa
cluster # 434 cluster # 434 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_434#0 length = 1101 sequences # 1

consensus_434#1 length = 238 sequences # 1

consensusID : consensus_434#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1101
fasta sequence

                              [TTCCTCGAGCACTGTTGGCCTACTGGCCAAACCAAATCCACCAAAACCCAGCCGCCATCGCCCCCTTCCTCGCCACCGCCATCCACTCTACCACCGATCTCCTCACCCACCACCATCGACGGCGACTACCTCCACCGTTGCAATGTCCCACCGTGACTCCTCCATTGGCTCATCCACTGCCACCGCGTCGTCCACCACCGGCGGTGGCCTCTCCTCCCTGTTCCCCAACCTCGACGTCCCCCTCTCTTCCCCTCAATCCACCGATCCACGCCGCCACAGCCCCCCTCTTTTCCCCTCTCTCCATCGCTCTCGCTCCCCCTCAACAGCCGCCGCATCTTTGTCAGGACAGCGACACTCGCTGCCCTCCGCTCACTCTTGTCCGGGCCGCCCCCGTTCTTCGCCTGCGCGCCCGCCTCTGCGCCGCCAGATCACCATCGTCCGGAGTCGCCGGGGCCGTTGTCCTCACCTGCCAAGCCGATCTCCTACGCGTTGCCGGTGGGATTTGCAACAGGGATGGCGTCGTGCCCTGCTCGTCTCTCCACAGCAGTCGGCGCCGATCCCCTGCCTCTCCCACGCCTTGCGTTGGCCTGGCACCACCCCCTCGCCTCTGCATCGCCTTGCATCGGGCTGCTCCTCCGTCGGCAGATCCCAACGCCGACATATCAAGGACTCCGCCTCGCTGCCGTCAAGGTGGTGGAGGTGGTTGCCTCCGGAGTCCCTGTGATGACGGCAACGCAGCTCGGCCACGTTGATTGCTTGGATGCGGCTCAGCAAATGCCTGGCGGGTAGCGATTGTTGCGCTCAGGTTTTCTTTCTTTGTTGCTAATACTGGGTCCTTATTTCTTTCTTTGCTTACTAACTTCTGGATCCCTATATCTTCTGACTTTTTTTTTTGCAGCAGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTAGTGAGCGTGCACGTGCAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCAAATTAGAAGGAGACTGCTGAGTCTTGATACTAATAAACATATACTTACTCAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC]

[+] EMBL AK109422             [TTCCTCGAGCACTGTTGGCCTACTGGCCAAACCAAATCCACCAAAACCCAGCCGCCATCGCCCCCTTCCTCGCCACCGCCATCCACTCTACCACCGATCTCCTCACCCACCACCATCGACGGCGACTACCTCCACCGTTGCAATGTCCCACCGTGACTCCTCCATTGGCTCATCCACTGCCACCGCGTCGTCCACCACCGGCGGTGGCCTCTCCTCCCTGTTCCCCAACCTCGACGTCCCCCTCTCTTCCCCTCAATCCACCGATCCACGCCGCCACAGCCCCCCTCTTTTCCCCTCTCTCCATCGCTCTCGCTCCCCCTCAACAGCCGCCGCATCTTTGTCAGGACAGCGACACTCGCTGCCCTCCGCTCACTCTTGTCCGGGCCGCCCCCGTTCTTCGCCTGCGCGCCCGCCTCTGCGCCGCCAGATCACCATCGTCCGGAGTCGCCGGGGCCGTTGTCCTCACCTGCCAAGCCGATCTCCTACGCGTTGCCGGTGGGATTTGCAACAGGGATGGCGTCGTGCCCTGCTCGTCTCTCCACAGCAGTCGGCGCCGATCCCCTGCCTCTCCCACGCCTTGCGTTGGCCTGGCACCACCCCCTCGCCTCTGCATCGCCTTGCATCGGGCTGCTCCTCCGTCGGCAGATCCCAACGCCGACATATCAAGGACTCCGCCTCGCTGCCGTCAAGGTGGTGGAGGTGGTTGCCTCCGGAGTCCCTGTGATGACGGCAACGCAGCTCGGCCACGTTGATTGCTTGGATGCGGCTCAGCAAATGCCTGGCGGGTAGCGATTGTTGCGCTCAGGTTTTCTTTCTTTGTTGCTAATACTGGGTCCTTATTTCTTTCTTTGCTTACTAACTTCTGGATCCCTATATCTTCTGACTTTTTTTTTTGCAGCAGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTAGTGAGCGTGCACGTGCAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCAAATTAGAAGGAGACTGCTGAGTCTTGATACTAATAAACATATACTTACTCAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC]




>consensus_434#0
TTCCTCGAGCACTGTTGGCCTACTGGCCAAACCAAATCCACCAAAACCCAGCCGCCATCG
CCCCCTTCCTCGCCACCGCCATCCACTCTACCACCGATCTCCTCACCCACCACCATCGAC
GGCGACTACCTCCACCGTTGCAATGTCCCACCGTGACTCCTCCATTGGCTCATCCACTGC
CACCGCGTCGTCCACCACCGGCGGTGGCCTCTCCTCCCTGTTCCCCAACCTCGACGTCCC
CCTCTCTTCCCCTCAATCCACCGATCCACGCCGCCACAGCCCCCCTCTTTTCCCCTCTCT
CCATCGCTCTCGCTCCCCCTCAACAGCCGCCGCATCTTTGTCAGGACAGCGACACTCGCT
GCCCTCCGCTCACTCTTGTCCGGGCCGCCCCCGTTCTTCGCCTGCGCGCCCGCCTCTGCG
CCGCCAGATCACCATCGTCCGGAGTCGCCGGGGCCGTTGTCCTCACCTGCCAAGCCGATC
TCCTACGCGTTGCCGGTGGGATTTGCAACAGGGATGGCGTCGTGCCCTGCTCGTCTCTCC
ACAGCAGTCGGCGCCGATCCCCTGCCTCTCCCACGCCTTGCGTTGGCCTGGCACCACCCC
CTCGCCTCTGCATCGCCTTGCATCGGGCTGCTCCTCCGTCGGCAGATCCCAACGCCGACA
TATCAAGGACTCCGCCTCGCTGCCGTCAAGGTGGTGGAGGTGGTTGCCTCCGGAGTCCCT
GTGATGACGGCAACGCAGCTCGGCCACGTTGATTGCTTGGATGCGGCTCAGCAAATGCCT
GGCGGGTAGCGATTGTTGCGCTCAGGTTTTCTTTCTTTGTTGCTAATACTGGGTCCTTAT
TTCTTTCTTTGCTTACTAACTTCTGGATCCCTATATCTTCTGACTTTTTTTTTTGCAGCA
GTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTAGTGAGCGTGCACGTG
CAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCAAATTAGAAGGAGACTGCTGA
GTCTTGATACTAATAAACATATACTTACTCAAAAAAAAAAAAGGCCACATGTGCTCGAGC
TGCAGGTCGCGGCCGCTAGAC

consensusID : consensus_434#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [GCCGCTGGATGCGGCTCANCAAATGCCTGGCGGGTAGCGATTGTTGCGCTCAGCAGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTANTGAGCGTGCACTTTCAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCNNATTACAANGAGACTGCTGAGTCTTNGATACTAATAAACATATACTTACTCATCAATATGTGATTACTCCATATAGCTAGCGG]

[+] EMBL AU225206             [GCCGCTGGATGCGGCTCANCAAATGCCTGGCGGGTAGCGATTGTTGCGCTCAGCAGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTANTGAGCGTGCACTTTCAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCNNATTACAANGAGACTGCTGAGTCTTNGATACTAATAAACATATACTTACTCATCAATATGTGATTACTCCATATAGCTAGCGG]




>consensus_434#1
GCCGCTGGATGCGGCTCANCAAATGCCTGGCGGGTAGCGATTGTTGCGCTCAGCAGTCGA
GCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTANTGAGCGTGCACTTTCAAGG
CACGTCATCACGTCGATACCTATTGAATGGAATCNNATTACAANGAGACTGCTGAGTCTT
NGATACTAATAAACATATACTTACTCATCAATATGTGATTACTCCATATAGCTAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_434#0      TTCCTCGAGCACTGTTGGCCTACTGGCCAAACCAAATCCACCAAAACCCAGCCGCCATCG 60
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      CCCCCTTCCTCGCCACCGCCATCCACTCTACCACCGATCTCCTCACCCACCACCATCGAC 120
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      GGCGACTACCTCCACCGTTGCAATGTCCCACCGTGACTCCTCCATTGGCTCATCCACTGC 180
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      CACCGCGTCGTCCACCACCGGCGGTGGCCTCTCCTCCCTGTTCCCCAACCTCGACGTCCC 240
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      CCTCTCTTCCCCTCAATCCACCGATCCACGCCGCCACAGCCCCCCTCTTTTCCCCTCTCT 300
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      CCATCGCTCTCGCTCCCCCTCAACAGCCGCCGCATCTTTGTCAGGACAGCGACACTCGCT 360
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      GCCCTCCGCTCACTCTTGTCCGGGCCGCCCCCGTTCTTCGCCTGCGCGCCCGCCTCTGCG 420
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      CCGCCAGATCACCATCGTCCGGAGTCGCCGGGGCCGTTGTCCTCACCTGCCAAGCCGATC 480
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      TCCTACGCGTTGCCGGTGGGATTTGCAACAGGGATGGCGTCGTGCCCTGCTCGTCTCTCC 540
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      ACAGCAGTCGGCGCCGATCCCCTGCCTCTCCCACGCCTTGCGTTGGCCTGGCACCACCCC 600
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      CTCGCCTCTGCATCGCCTTGCATCGGGCTGCTCCTCCGTCGGCAGATCCCAACGCCGACA 660
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      TATCAAGGACTCCGCCTCGCTGCCGTCAAGGTGGTGGAGGTGGTTGCCTCCGGAGTCCCT 720
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      GTGATGACGGCAACGCAGCTCGGCCACGTTGATTGCTTGGATGCGGCTCAGCAAATGCCT 780
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      GGCGGGTAGCGATTGTTGCGCTCAGGTTTTCTTTCTTTGTTGCTAATACTGGGTCCTTAT 840
consensus_434#1      ------------------------------------------------------------
                                                                                 

consensus_434#0      TTCTTTCTTTGCTTACTAACTTCTGGATCCCTA-TATCTTCTGACTTTTTTTTTTGCAGC 899
consensus_434#1      ----GCCGCTGGATGCGGCTCANCAAATGCCTGGCGGGTAGCGATTGTTGCGCT--CAGC 54
                           *  **  * *          ** ***      *   ** * **    *  ****

consensus_434#0      AGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTAGTGAGCGTGCACGT 959
consensus_434#1      AGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTANTGAGCGTGCACTT 114
                     ********************************************** *********** *

consensus_434#0      GCAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCAAATTAGAAGGAGACTGCTG 1019
consensus_434#1      TCAAGGCACGTCATCACGTCGATACCTATTGAATGGAATCNNATTACAANGAGACTGCTG 174
                      ***************************************  **** ** **********

consensus_434#0      AGTCTTG-ATACTAATAAACATATACTTACTCAAAAAAAAAAAAG-GCCACATGTGCTCG 1077
consensus_434#1      AGTCTTNGATACTAATAAACATATACTTACTCATCAATATGTGATTACTCCATATAGCT- 233
                     ******  *************************  ** *    *   *  *** *     

consensus_434#0      AGCTGCAGGTCGCGGCCGCTAGAC 1101
consensus_434#1      AGCGG------------------- 238
                     *** *