cluster # 4340

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Oryza sativa
cluster # 4340 cluster # 4340 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4340#0 length = 2402 sequences # 3
consensusID : consensus_4340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2402
fasta sequence
                              [TTGTTGCTTCCTCCTCGAGAGAGCTCAACGGCGACGAAGCAGCGCGACGCGACGCGACGCCCTGCGGTGGCGTGGCAACACCGCAACAATGGCGCCGCCGCCGCCGTCGCCGCCGTGCCGGCCGCGAGTCAAGCCCGAGCGCGCCCTTCTGTGCTTCTCCCTCCTCCTCCTCCTGACCGCCACCACGGCGAACGCCAGCATCACCGACTGCCCAACTACAAGCAGCACCAACTCCAGCCATGTCGACGACGGTGCCTTCGGGGCCAACCTCCGCGCTCTCCTCTCCTCCCTTTCCGCAGCCGCGGCGGCATCGTCGTCGGGGTTCGCCGAGAACGCGACCGGCGCGGCGCCGGACACGGCGTACGGCCTCGCGCAGTGCCGCGGCGGCATCGTCGGCGGCGGCAATGGCACCAGCTGCCGCTCCTGCCTCGACGACTCGGTGCGGGACGCGGCCAAGGCGTGCCCCGGCGAGAAATCCGCCGTGATCATCTCCGACTACTGCCTCGTCCGGTACTCCAACGCGAGCTTCGCCGGCGCCGCCGACGAGCGGACGGTGAAGCTCTGGTGGAACACGGACAACGCGACGCAGCCGGAGAGGTTCAAGTCGCTGCTGGGGACGCTGATGGGCAACCTCACCGACGCGGCGGCGCGCGCGTCGTCGCCGCTGATGTTCGCGGCCGGCGAGACCGACCTCCCGCCCTTCACCAAGATCTACGGCATGGCGCAGTGCACCCGCGACCTCGCCGCCGGCGACTGCTACCGCTGCCTCGTCGGCGCCGTCAACAACATCCCGAAATGCTGCGACGGGAAGCAGGGCGGGCAGGTCATCACGAGGAGCTGCTCCATCCGGTTCGAGGTGTACCCGTTCTTCGACGCCCAGGCCGCCAAGGCGGCCATGTCGCCTGCGCCGGCGCCGGCGCCGGTGACGACGCCCACCGGGGTCAATGGAAGTAATCACACAGTCAGTAAGTCTGTGATTGTCCCAGTTACTGTGGGAGTTGCCGTGTTACTAGTGGTAATACTGCTGCTAATTGCCCTTTGTCTGTGCAAGAGGAACAGAAAACCACATAAGCATATGATGATTGGAAGCGTCGATCTTGGAGATGAAGACGAAATGAGAGGCTCAGAATCTCTCTTGTATGACTTGAGTACTCTAAGAGCAGCAACTGCCAACTTCTCAGAAGAAAATAAGCTCGGAGAAGGTGGATTTGGCCCAGTCTACGAAGGTACACTGCAAAATGGTCAAGAGATTGCAGTGAAGAGATTGTCAGCAACTTCCCATCAAGGGCAATTGGAGATGAAGAATGAGGTAGTCTTGGTTGCAAAGCTTCAGCACAAGAATCTGGTCAGGCTGCTAGGATGCTGCATCGAAGAACGGGAGAAAATCCTAGTTTATGAGTTCCTCTGTAACAAAAGCCTCGACACTATCCTTTTCGACACTTCAAGACAGCAAGACCTTAACTGGGAGCAAAGATTCAAGATCATTGAAGGGATCGGAAGAGGGCTTCTTTATCTTCATGAAGATTCAAGGCTCAAGATCATCCACCGTGATCTCAAAGCTAGCAACATCTTGTTAGATGTAGACATGAACCCCAAGATATCAGACTTCGGCCTTGCCAAGTTATTTAACATGGAAGCGAGCGTAGCAAACACTAGCAGGATTGCTGGAACCTACGGATACATGGCGCCGGAGTACGCGCTGCACGGCATCTTCTCGGCCAAATCCGACGTCTTCAGCTAC-GGCGTGCTCCTCCTCGAGATCGTCACCGGCCGCCGCAACACCTGCCTCCATGACTCCGAGGATCTCCTGGCATTTGTCTGGAGGCACTGGAGCCGCGGCGGCGCCGGGGAGCTGCTCGACGGC-TGCCCCGCCGCCGGCCGCCGGCCGCAGGAGCTTCTGCGGTGCATCCACGTGGGGCTCCTCTGCGTGCAGGAGGACCCGCAGCTCCGCCCCGGCATGGCGGCAGTCGTCGTCATGCTCAACAGCCGCTCGGTCACGCTGCCGGCGCCCTCGGCGCCGGCGTTCGTCTCCGCGAGCCGTGGGATCGGCGGAAGCCCGCCGCCGGCGGCGGCGGCGGGAGATGCGCCGGCGAGGAGCACGGATCACGAGGTTCCTACGGCTGCTCGATAGCCGTCGATC-AACGGCGCTTCTGTCTCTGAACTAGAGCCCCGGTGACATCGGAGATTCGGAGGACTGACGGCTGGGCCCGGCTTGTGTTTCTGCTTTGAATTTGAAAATTTGTTGCTCGTTTTGCATTCAAAATTTCTCTCGGATTTAATGCATTTCTGTATGCCGTTCAGTGTTGGAGTAGTTAAGTGGATATGAAAATGTAATGACGGCTTTGTAATTTAGATTTTTCGACGAGCTTAGCAATTCAAGTGGTTTATGTAGTACAAAAAAA]

[+] EMBL AK110420             [TTGTTGCTTCCTCCTCGAGAGAGCTCAACGGCGACGAAGCAGCGCGACGCGACGCGACGCCCTGCGGTGGCGTGGCAACACCGCAACAATGGCGCCGCCGCCGCCGTCGCCGCCGTGCCGGCCGCGAGTCAAGCCCGAGCGCGCCCTTCTGTGCTTCTCCCTCCTCCTCCTCCTGACCGCCACCACGGCGAACGCCAGCATCACCGACTGCCCAACTACAAGCAGCACCAACTCCAGCCATGTCGACGACGGTGCCTTCGGGGCCAACCTCCGCGCTCTCCTCTCCTCCCTTTCCGCAGCCGCGGCGGCATCGTCGTCGGGGTTCGCCGAGAACGCGACCGGCGCGGCGCCGGACACGGCGTACGGCCTCGCGCAGTGCCGCGGCGGCATCGTCGGCGGCGGCAATGGCACCAGCTGCCGCTCCTGCCTCGACGACTCGGTGCGGGACGCGGCCAAGGCGTGCCCCGGCGAGAAATCCGCCGTGATCATCTCCGACTACTGCCTCGTCCGGTACTCCAACGCGAGCTTCGCCGGCGCCGCCGACGAGCGGACGGTGAAGCTCTGGTGGAACACGGACAACGCGACGCAGCCGGAGAGGTTCAAGTCGCTGCTGGGGACGCTGATGGGCAACCTCACCGACGCGGCGGCGCGCGCGTCGTCGCCGCTGATGTTCGCGGCCGGCGAGACCGACCTCCCGCCCTTCACCAAGATCTACGGCATGGCGCAGTGCACCCGCGACCTCGCCGCCGGCGACTGCTACCGCTGCCTCGTCGGCGCCGTCAACAACATCCCGAAATGCTGCGACGGGAAGCAGGGCGGGCAGGTCATCACGAGGAGCTGCTCCATCCGGTTCGAGGTGTACCCGTTCTTCGACGCCCAGGCCGCCAAGGCGGCCATGTCGCCTGCGCCGGCGCCGGCGCCGGTGACGACGCCCACCGGGGTCAATGGAAGTAATCACACAGTCAGTAAGTCTGTGATTGTCCCAGTTACTGTGGGAGTTGCCGTGTTACTAGTGGTAATACTGCTGCTAATTGCCCTTTGTCTGTGCAAGAGGAACAGAAAACCACATAAGCATATGATGATTGGAAGCGTCGATCTTGGAGATGAAGACGAAATGAGAGGCTCAGAATCTCTCTTGTATGACTTGAGTACTCTAAGAGCAGCAACTGCCAACTTCTCAGAAGAAAATAAGCTCGGAGAAGGTGGATTTGGCCCAGTCTACGAAGGTACACTGCAAAATGGTCAAGAGATTGCAGTGAAGAGATTGTCAGCAACTTCCCATCAAGGGCAATTGGAGATGAAGAATGAGGTAGTCTTGGTTGCAAAGCTTCAGCACAAGAATCTGGTCAGGCTGCTAGGATGCTGCATCGAAGAACGGGAGAAAATCCTAGTTTATGAGTTCCTCTGTAACAAAAGCCTCGACACTATCCTTTTCGACACTTCAAGACAGCAAGACCTTAACTGGGAGCAAAGATTCAAGATCATTGAAGGGATCGGAAGAGGGCTTCTTTATCTTCATGAAGATTCAAGGCTCAAGATCATCCACCGTGATCTCAAAGCTAGCAACATCTTGTTAGATGTAGACATGAACCCCAAGATATCAGACTTCGGCCTTGCCAAGTTATTTAACATGGAAGCGAGCGTAGCAAACACTAGCAGGATTGCTGGAACCTACGGATACATGGCGCCGGAGTACGCGCTGCACGGCATCTTCTCGGCCAAATCCGACGTCTTCAGCTAC GGCGTGCTCCTCCTCGAGATCGTCACCGGCCGCCGCAACACCTGCCTCCATGACTCCGAGGATCTCCTGGCATTTGTCTGGAGGCACTGGAGCCGCGGCGGCGCCGGGGAGCTGCTCGACGGC TGCCCCGCCGCCGGCCGCCGGCCGCAGGAGCTTCTGCGGTGCATCCACGTGGGGCTCCTCTGCGTGCAGGAGGACCCGCAGCTCCGCCCCGGCATGGCGGCAGTCGTCGTCATGCTCAACAGCCGCTCGGTCACGCTGCCGGCGCCCTCGGCGCCGGCGTTCGTCTCCGCGAGCCGTGGGATCGGCGGAAGCCCGCCGCCGGCGGCGGCGGCGGGAGATGCGCCGGCGAGGAGCACGGATCACGAGGTTCCTACGGCTGCTCGATAGCCGTCGATC AACGGCGCTTCTGTCTCTGAACTAGAGCCCCGGTGACATCGGAGATTCGGAGGACTGACGGCTGGGCCCGGCTTGTGTTTCTGCTTTGAATTTGAAAATTTGTTGCTCGTTTTGCATTCAAAATTTCTCTCGGATTTAATGCATTTCTGTATGCCGTTCAGTGTTGGAGTAGTTAAGTGGATATGAAAATGTAATGACGGCTTTGTAATTTAGATTTTTCGACGAGCTTAGCAATTCAAGTGG                   ]
[+] EMBL AU101613             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCAAACACTAGCAGGATTGCTGGAACCTACGGATACATGGCGCCGGAGTACGCGCTGCACGGCATCTTCTCGGCCAAATCCGACGTCTTCAGCTAC GGCGTGCTCCTCCTCGAGATCGTCACCGGCCGCCGCAACACCTGCCTCCATGACTCCGAGGATCTCCTGGCATTTGTCTGGAGGCACTGGAGCCGCGGCGGCGCCGGGGAGCTGCTCGACGGC TGCCCCGCCGCCGGCCGCCGGCCGCAGGAGCTTCTGCGGTGCATCCACGTGGGGCTCCTCTGCGTGCAGGAGGACCCGCAGCTCCGCCCCGGCATGGCGGCAGTCGTCGTCATGCTCAACAGCCGCTCGGTCACGCTGCCGGCGCCCTCGGCGCCGGCGTTCGTCTCCGCGAGCCGTGGGATCGGCGGAAGCCCGCCGCCGGCGGCGGCGGCGGGAGATGCGCCGGCGAGGAGCACGGATCACGAGGTTCCTACGGCTGCTCGATAGCCGTCGATCAAACGGCGCTTCTGTCTCTG                                                                                                                                                                                                                                                   ]
[+] EMBL AU101614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAATCCGACGTCTTCAGNTACGGGCGTGCTCCTCCTCGAGATCGTCACCGGCCGCCGCAACACCTGCCTCCATGACTCCGAGGATCTCCTGGCATTTGTCTGAAGGCACTGGAGCCGCGGCGGCGCCGGGAAGCTGCTCGACGGCTTGCCCCGCCGCCGGCCGCCGGCCGCAGGAGCTTCTGCGGTGCATCCACGTGGGGCTCCTCTGCGTGCAGGAGGACCCGCAGCTCCGCCCCGGCATGGCGGCAGTCGTCGTCATGCTCAACAGCCGCTCGGTCACGCTGCCGGCGCCCTCGGCGCCGGCGTTCGTCTCCGCGAGCCGTGGGATCGGCGGAAGCCCGCCGCCGGCGGCGGCGGCGGGAGATGCGCCGGCGAGGAGCACGGATCACGAGGTTCCTACGGCTGCTCGATAGCCGTCGATC AACGGCGCTTCTGTCTCTGAACTAGAGCCCCGGTGACATCGGAGATTCGGAGGACTGACGGCTGGGCCCGGCTTATGTTTCTGCTCTGAATTTGAAAATTTGTTGCTCGTTTTGCATTCAAAATTTCTCTCGGATTTAATGCATTTCTGTATGCCGTTCAGTGTTGGAGTAGTTAAGTGGATATGAAAATGTAATGACGGCTTTGTAATTTAAATTTTTCGACGAGCTTAGCAATTCAAGTGGTTTATGTAGTACAAAAAAA]




>consensus_4340#0
TTGTTGCTTCCTCCTCGAGAGAGCTCAACGGCGACGAAGCAGCGCGACGCGACGCGACGC
CCTGCGGTGGCGTGGCAACACCGCAACAATGGCGCCGCCGCCGCCGTCGCCGCCGTGCCG
GCCGCGAGTCAAGCCCGAGCGCGCCCTTCTGTGCTTCTCCCTCCTCCTCCTCCTGACCGC
CACCACGGCGAACGCCAGCATCACCGACTGCCCAACTACAAGCAGCACCAACTCCAGCCA
TGTCGACGACGGTGCCTTCGGGGCCAACCTCCGCGCTCTCCTCTCCTCCCTTTCCGCAGC
CGCGGCGGCATCGTCGTCGGGGTTCGCCGAGAACGCGACCGGCGCGGCGCCGGACACGGC
GTACGGCCTCGCGCAGTGCCGCGGCGGCATCGTCGGCGGCGGCAATGGCACCAGCTGCCG
CTCCTGCCTCGACGACTCGGTGCGGGACGCGGCCAAGGCGTGCCCCGGCGAGAAATCCGC
CGTGATCATCTCCGACTACTGCCTCGTCCGGTACTCCAACGCGAGCTTCGCCGGCGCCGC
CGACGAGCGGACGGTGAAGCTCTGGTGGAACACGGACAACGCGACGCAGCCGGAGAGGTT
CAAGTCGCTGCTGGGGACGCTGATGGGCAACCTCACCGACGCGGCGGCGCGCGCGTCGTC
GCCGCTGATGTTCGCGGCCGGCGAGACCGACCTCCCGCCCTTCACCAAGATCTACGGCAT
GGCGCAGTGCACCCGCGACCTCGCCGCCGGCGACTGCTACCGCTGCCTCGTCGGCGCCGT
CAACAACATCCCGAAATGCTGCGACGGGAAGCAGGGCGGGCAGGTCATCACGAGGAGCTG
CTCCATCCGGTTCGAGGTGTACCCGTTCTTCGACGCCCAGGCCGCCAAGGCGGCCATGTC
GCCTGCGCCGGCGCCGGCGCCGGTGACGACGCCCACCGGGGTCAATGGAAGTAATCACAC
AGTCAGTAAGTCTGTGATTGTCCCAGTTACTGTGGGAGTTGCCGTGTTACTAGTGGTAAT
ACTGCTGCTAATTGCCCTTTGTCTGTGCAAGAGGAACAGAAAACCACATAAGCATATGAT
GATTGGAAGCGTCGATCTTGGAGATGAAGACGAAATGAGAGGCTCAGAATCTCTCTTGTA
TGACTTGAGTACTCTAAGAGCAGCAACTGCCAACTTCTCAGAAGAAAATAAGCTCGGAGA
AGGTGGATTTGGCCCAGTCTACGAAGGTACACTGCAAAATGGTCAAGAGATTGCAGTGAA
GAGATTGTCAGCAACTTCCCATCAAGGGCAATTGGAGATGAAGAATGAGGTAGTCTTGGT
TGCAAAGCTTCAGCACAAGAATCTGGTCAGGCTGCTAGGATGCTGCATCGAAGAACGGGA
GAAAATCCTAGTTTATGAGTTCCTCTGTAACAAAAGCCTCGACACTATCCTTTTCGACAC
TTCAAGACAGCAAGACCTTAACTGGGAGCAAAGATTCAAGATCATTGAAGGGATCGGAAG
AGGGCTTCTTTATCTTCATGAAGATTCAAGGCTCAAGATCATCCACCGTGATCTCAAAGC
TAGCAACATCTTGTTAGATGTAGACATGAACCCCAAGATATCAGACTTCGGCCTTGCCAA
GTTATTTAACATGGAAGCGAGCGTAGCAAACACTAGCAGGATTGCTGGAACCTACGGATA
CATGGCGCCGGAGTACGCGCTGCACGGCATCTTCTCGGCCAAATCCGACGTCTTCAGCTA
CGGCGTGCTCCTCCTCGAGATCGTCACCGGCCGCCGCAACACCTGCCTCCATGACTCCGA
GGATCTCCTGGCATTTGTCTGGAGGCACTGGAGCCGCGGCGGCGCCGGGGAGCTGCTCGA
CGGCTGCCCCGCCGCCGGCCGCCGGCCGCAGGAGCTTCTGCGGTGCATCCACGTGGGGCT
CCTCTGCGTGCAGGAGGACCCGCAGCTCCGCCCCGGCATGGCGGCAGTCGTCGTCATGCT
CAACAGCCGCTCGGTCACGCTGCCGGCGCCCTCGGCGCCGGCGTTCGTCTCCGCGAGCCG
TGGGATCGGCGGAAGCCCGCCGCCGGCGGCGGCGGCGGGAGATGCGCCGGCGAGGAGCAC
GGATCACGAGGTTCCTACGGCTGCTCGATAGCCGTCGATCAACGGCGCTTCTGTCTCTGA
ACTAGAGCCCCGGTGACATCGGAGATTCGGAGGACTGACGGCTGGGCCCGGCTTGTGTTT
CTGCTTTGAATTTGAAAATTTGTTGCTCGTTTTGCATTCAAAATTTCTCTCGGATTTAAT
GCATTTCTGTATGCCGTTCAGTGTTGGAGTAGTTAAGTGGATATGAAAATGTAATGACGG
CTTTGTAATTTAGATTTTTCGACGAGCTTAGCAATTCAAGTGGTTTATGTAGTACAAAAA
AA
clustalw multiple alignements is not computed in this case