These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1989 fasta sequence [GAGGAAGAGCTAGCTATCCTATGGTGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCATCTCATGCTCAGCACTGAATGCGCCTGCAGACAGCACTGATGAAGACCAGGAAAAGCTGGAGGAGCCCACTAGCACAAGAATGGCTGACAAGAATCTCTGTGCAATATGTCTGGAGCCCCTCAGCACCGGCAGCGTTGATATTGACAATGGTGACAGGCCAGCAATCTTCACATCACAATGCTCCCACTCCTTCCACTTCCTATGCATCGCCTCCAACATTCGGCACGGCAATGTTACATGTCCCATCTGCCGTGCACAGTGGTCTCAGCTGCCGCGTGACTTGAAGGTGCCACCATTGCTGCAGAACAACCAGTCTGACCCAATCCTCCGCATCCTTGATGACAACATCGCGACATCTCGTTTCAACAGAAGGTCATCCATCCGTGCTGCCCGGTACAACGACGATGATCCGGTTGAGCCTTACACCTTGACCGAGCATGTGGATCCATGCCTTCGCTTCGCTCTGATCCCATCCCCAGTGGCGGCTCACCATCATGCTCTCGGACATTACCCATGTGGCCGTGTGATGCCACTGCAGCAGCATTGCCAGTACAGCAGCTCCTCCATGCTCTCACCGCCACAGATTGCTTCACCAAGTGGGCAGAGGCGCGCTTACCTCTCCGTCAGTCTCGCGCCACAGCCAGCCATGGACCTAGTTCTGGTTGCCAGCCCTAATGGGCCACATCTCAGGCTCCTGAAGCAGGCAATGGCGCTGGCTGTCTTCTCCATGCGCGCAATTGACCGGTTAGCCATTGTCACAAATGCCACCACTGCAACCCGCGCCTTCCCCTTGCGCCGAATGTCATCCCATGGAAAGCGAATGGCATTGCAGGTCATTGAACACCTCTGCTGTGTTGGTGGTACTGATCCTGTAGGGGCATTGCAGAAGGGCCTGAAGATACTAGAGGACCGGGCGCACCAGAACCCAAGCAGTTGCATTCTTCACCTGTCAGACCATCCAATCCGAAGCTGTTTCGGGGTCGACATGAACCGTTTCAACATCCCGGTTCACCAGTTCCATGTCGGCCTCGGTTTCGGGGTGCAGAATGGCTTTGTGATGCACGAGTTTGAGGAGCTCTTAGCGCGGTTGCTTGGCGGTGTCATAAGCGACACCCAGCTCAGGATTGGCGAGCACGGTGGAGTGGTGAGGCTAGGTGAGCTGAGGGGTGGCGAAGAGAGGAGGATCCCGCTTGACCTGGTGTCGGACTGCGGCTTCATACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGGCGAAGTCGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGGTCTGAGTATCGGCGGTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGATCCGTTCATGGCGCGGCGATGGGCGAAGCATTTCAATGTGTATAGGGCCTGAGTTAAAAAGAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGTTTGACAGCATATGATTCTTGTTGGCTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCAATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGCATTGGAGTGAGTTAT] [+] EMBL AK064311 [GAGGAAGAGCTAGCTATCCTATGGTGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCATCTCATGCTCAGCACTGAATGCGCCTGCAGACAGCACTGATGAAGACCAGGAAAAGCTGGAGGAGCCCACTAGCACAAGAATGGCTGACAAGAATCTCTGTGCAATATGTCTGGAGCCCCTCAGCACCGGCAGCGTTGATATTGACAATGGTGACAGGCCAGCAATCTTCACATCACAATGCTCCCACTCCTTCCACTTCCTATGCATCGCCTCCAACATTCGGCACGGCAATGTTACATGTCCCATCTGCCGTGCACAGTGGTCTCAGCTGCCGCGTGACTTGAAGGTGCCACCATTGCTGCAGAACAACCAGTCTGACCCAATCCTCCGCATCCTTGATGACAACATCGCGACATCTCGTTTCAACAGAAGGTCATCCATCCGTGCTGCCCGGTACAACGACGATGATCCGGTTGAGCCTTACACCTTGACCGAGCATGTGGATCCATGCCTTCGCTTCGCTCTGATCCCATCCCCAGTGGCGGCTCACCATCATGCTCTCGGACATTACCCATGTGGCCGTGTGATGCCACTGCAGCAGCATTGCCAGTACAGCAGCTCCTCCATGCTCTCACCGCCACAGATTGCTTCACCAAGTGGGCAGAGGCGCGCTTACCTCTCCGTCAGTCTCGCGCCACAGCCAGCCATGGACCTAGTTCTGGTTGCCAGCCCTAATGGGCCACATCTCAGGCTCCTGAAGCAGGCAATGGCGCTGGCTGTCTTCTCCATGCGCGCAATTGACCGGTTAGCCATTGTCACAAATGCCACCACTGCAACCCGCGCCTTCCCCTTGCGCCGAATGTCATCCCATGGAAAGCGAATGGCATTGCAGGTCATTGAACACCTCTGCTGTGTTGGTGGTACTGATCCTGTAGGGGCATTGCAGAAGGGCCTGAAGATACTAGAGGACCGGGCGCACCAGAACCCAAGCAGTTGCATTCTTCACCTGTCAGACCATCCAATCCGAAGCTGTTTCGGGGTCGACATGAACCGTTTCAACATCCCGGTTCACCAGTTCCATGTCGGCCTCGGTTTCGGGGTGCAGAATGGCTTTGTGATGCACGAGTTTGAGGAGCTCTTAGCGCGGTTGCTTGGCGGTGTCATAAGCGACACCCAGCTCAGGATTGGCGAGCACGGTGGAGTGGTGAGGCTAGGTGAGCTGAGGGGTGGCGAAGAGAGGAGGATCCCGCTTGACCTGGTGTCGGACTGCGGCTTCATACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGGCGAAGTCGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGGTCTGAGTATCGGCGGTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGATCCGTTCATGGCGCGGCGATGGGCGAAGCATTTCAATGTGTATAGGGCCTGAGTTAAAAAGAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGTTTGACAGCATATGATTCTTGTTGGCTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCAATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGCATTGGAGT ] [+] EMBL CA763858 [ TTGGTTCTTTA TTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCAATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGCATTGGAGTGAGTTAT] consensusID : consensus_4342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [TGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCGTATGCATTCTCTCTCTACATTTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCTTAAGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTTTGGGGTGTTTCTTCCCAGTTGGTAGATGTTCAAGATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTTTTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACCATCAATGTATCGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGACTGGGCATTTTTTGTCTCTCTACTACCATCTGCAGGTGATTTTCAAGTTCCTTTCCTTCTAGCAGTAAAACTCAATGAGCTGTCACTGCCTGTCCTTTTCACCTCCCACATTGCAACCCTGCTTGATTCTCTCCTTCCATTTCAGATGTTGTTT] [+] EMBL AK062446 [TGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCGTATGCATTCTCTCTCTACATTTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCTTAAGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTTTGGGGTGTTTCTTCCCAGTTGGTAGATGTTCAAGATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTTTTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACCATCAATGTATCGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGACTGGGCATTTTTTGTCTCTCTACTACCATCTGCAGGTGATTTTCAAGTTCCTTTCCTTCTAGCAGTAAAACTCAATGAGCTGTCACTGCCTGTCCTTTTCACCTCCCACATTGCAACCCTGCTTGATTCTCTCCTTCCATTTCAGATGTTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4342#0 GAGGAAGAGCTAGCTATCCTATGGTGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGG 60 consensus_4342#1 ------------------------TGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGG 36 ************************************ consensus_4342#0 AGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGC 120 consensus_4342#1 AGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGC 96 ************************************************************ consensus_4342#0 GCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCA 180 consensus_4342#1 GCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCA 156 ************************************************************ consensus_4342#0 CGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCATCT-CATGCTCAGCACTGAATGCGC 239 consensus_4342#1 CGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCGTATGCATTCTCT-CTCTACAT---- 211 ********************************** * * *** *** * ** ** consensus_4342#0 CTGCAGACAGCACTGATGAAGACCAGGAAAAGCTGGAGGAGCCCACTAGCACAAGAATGG 299 consensus_4342#1 -TTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCT 270 * ** * * * * * * * * **** * consensus_4342#0 CTGACAAGAATCT--CTGTGCAATATGTCTGGAGCCCCT-CAGCACCGGCAGCGTTGATA 356 consensus_4342#1 TAAGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTT-TGGGGTGTTTC 329 **** ** ** *** *** ** * * *** * ** * consensus_4342#0 TTGACAATGGTGACAGGCCAGCAATCTTCACATCACAATGCTCCCACTCCTTCCACTTCC 416 consensus_4342#1 TTCCCAGT--TGGTAGATGTTCAAGATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTT 387 ** ** * ** ** *** * *** * * * * * ** consensus_4342#0 TATGCATCGCCTCCAACA-TTCGGCACGGCAATGTTACATGTCCCATCTGCCGTGCACAG 475 consensus_4342#1 TTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACCATCAAT-----GTAT 442 * * * * * * ** * * ** ** * ***** * consensus_4342#0 TGGTCTCAGCTGCCGCGTGACTTGAAGGTGCCACCATTGCTGCAGAACAACCAGTCTGAC 535 consensus_4342#1 CGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGAC--------TGGG 494 *** ** * * * ** *** ** * * * ** * * ** ** consensus_4342#0 CCAATCCTCCGCATCCTTGATGACAACATCGCGACATCTCGTTTCAACAGAAGGTCATCC 595 consensus_4342#1 C--ATTTTTTGTCTCTCTACTACCATCTGCAGGTGAT----TTTCAA------GT--TCC 540 * ** * * ** * * ** * * * ** ****** ** *** consensus_4342#0 ATCCGTGCTGCCCGGTACAACGACGATGATCCGGTTGAGCCTTACACCTTGACCGAGCAT 655 consensus_4342#1 TTTCCTTCTAGC-AGTAAAACT-CAATGAGCTGTCACTGCCTGTCCTTTTCACCTCCCAC 598 * * * ** * *** *** * **** * * **** * ** *** ** consensus_4342#0 GTGG-ATCCATGCCTTCGCTTCGCTCTGATCCCATCCCCAGTGGCGGCTCACCATCATGC 714 consensus_4342#1 ATTGCAACCCTGCTT--GATTCTCTCC--TTCCATTTCAGATGTTGTTT----------- 643 * * * ** *** * * *** *** * **** * ** * * consensus_4342#0 TCTCGGACATTACCCATGTGGCCGTGTGATGCCACTGCAGCAGCATTGCCAGTACAGCAG 774 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 CTCCTCCATGCTCTCACCGCCACAGATTGCTTCACCAAGTGGGCAGAGGCGCGCTTACCT 834 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 CTCCGTCAGTCTCGCGCCACAGCCAGCCATGGACCTAGTTCTGGTTGCCAGCCCTAATGG 894 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GCCACATCTCAGGCTCCTGAAGCAGGCAATGGCGCTGGCTGTCTTCTCCATGCGCGCAAT 954 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TGACCGGTTAGCCATTGTCACAAATGCCACCACTGCAACCCGCGCCTTCCCCTTGCGCCG 1014 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 AATGTCATCCCATGGAAAGCGAATGGCATTGCAGGTCATTGAACACCTCTGCTGTGTTGG 1074 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TGGTACTGATCCTGTAGGGGCATTGCAGAAGGGCCTGAAGATACTAGAGGACCGGGCGCA 1134 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 CCAGAACCCAAGCAGTTGCATTCTTCACCTGTCAGACCATCCAATCCGAAGCTGTTTCGG 1194 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GGTCGACATGAACCGTTTCAACATCCCGGTTCACCAGTTCCATGTCGGCCTCGGTTTCGG 1254 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GGTGCAGAATGGCTTTGTGATGCACGAGTTTGAGGAGCTCTTAGCGCGGTTGCTTGGCGG 1314 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TGTCATAAGCGACACCCAGCTCAGGATTGGCGAGCACGGTGGAGTGGTGAGGCTAGGTGA 1374 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GCTGAGGGGTGGCGAAGAGAGGAGGATCCCGCTTGACCTGGTGTCGGACTGCGGCTTCAT 1434 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 ACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGGCGAAGT 1494 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 CGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGG 1554 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TCTGAGTATCGGCGGTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGA 1614 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TCCGTTCATGGCGCGGCGATGGGCGAAGCATTTCAATGTGTATAGGGCCTGAGTTAAAAA 1674 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGTTTGACA 1734 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GCATATGATTCTTGTTGGCTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCAT 1794 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 CTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCAT 1854 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCA 1914 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 ATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGC 1974 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 ATTGGAGTGAGTTAT 1989 consensus_4342#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||