These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence [AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTAGCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCACTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCATCACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGGCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG] [+] EMBL CB680312 [AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTAGCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCACTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCATCACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGGCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG] [-] EMBL CA767538 [ GCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGAC ] consensusID : consensus_4348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTGCCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCTCGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCACCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGCTNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGACCCTGGCCTGCTGAANTTGACAGTCAGT] [-] EMBL BI805815 [TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTGCCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCTCGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCACCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGCTNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGACCCTGGCCTGCTGAANTTGACAGTCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4348#0 -----------AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT 49 consensus_4348#1 TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT 60 ************************************************* consensus_4348#0 GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC 109 consensus_4348#1 GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC 120 ************************************************************ consensus_4348#0 ATGAG-GCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT 168 consensus_4348#1 ATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT 180 ***** ****************************************************** consensus_4348#0 GA-GCAC-GGCGTAGCCGAG-CAGGCGGTAC----GCGGCGACGAATCCCAGCATGAC-G 220 consensus_4348#1 GATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTG 240 ** **** ** ******** ********** * * ****************** * consensus_4348#0 CCCAC-GTTGCGCCACCGG--CACTC-GTC-GCCGA-GCCCCTCCCGG--CGCAGCACCT 272 consensus_4348#1 CCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCT 300 ***** *********** * ***** *** ***** ********** ********* consensus_4348#0 CGTC-TCCG----GTGGCCAC-GCA-GGCGCCCATCACCCGC----GCCACGCACCTCCC 321 consensus_4348#1 CGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCA 360 **** **** *** **** *** **************** * * *** ** consensus_4348#0 CCCGCCCGC-GAACTC--GTTCACCAGCAGC-GCCTC--GAAC-GGCCACTTG-AACAGC 373 consensus_4348#1 CCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGC 420 **** **** ****** ************* ***** **** ** ****** ****** consensus_4348#0 GACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCG 433 consensus_4348#1 TN-GGACAGGTTATGTGCATGAGACACCCCNA-AGCACTGGATCTGTG-CAATCTGCCCT 477 * ** *** ** *** * * * * * * * * * ** consensus_4348#0 GAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCC 493 consensus_4348#1 GGACCCTGGCCTGCTGAANTTGACAGTCAGT----------------------------- 508 * ** ** ** * * consensus_4348#0 GGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACC 553 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 AGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACC 613 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 GGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCC 673 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 ACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGC 733 consensus_4348#1 ------------------------------------------------------------ consensus_4348#0 TCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG 778 consensus_4348#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||