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Oryza sativa
cluster # 4348 cluster # 4348       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4348#0 length = 778 sequences # 2  
consensus_4348#1 length = 508 sequences # 1  

consensusID : consensus_4348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 778
fasta sequence
                              [AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTAGCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCACTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCATCACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGGCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG]

[+] EMBL CB680312             [AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTAGCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCACTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCATCACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGGCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG]
[-] EMBL CA767538             [                                                                                                                                                                                                                                                                                                                                                                       GCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGAC                                                                                                                                                                                                                                                                                                                                       ]


>consensus_4348#0 AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGT AGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCG GGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTA GCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCA CTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCAT CACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGG CCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGC GATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCC CACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAG GATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGC CATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACAC CACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGC CAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG



consensusID : consensus_4348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence
                              [TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTGCCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCTCGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCACCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGCTNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGACCCTGGCCTGCTGAANTTGACAGTCAGT]

[-] EMBL BI805815             [TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTGCCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCTCGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCACCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGCTNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGACCCTGGCCTGCTGAANTTGACAGTCAGT]


>consensus_4348#1 TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC ATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT GATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTG CCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCT CGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCA CCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGC TNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGA CCCTGGCCTGCTGAANTTGACAGTCAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4348#0      -----------AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT 49
consensus_4348#1      TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT 60
                                 *************************************************

consensus_4348#0      GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC 109
consensus_4348#1      GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC 120
                      ************************************************************

consensus_4348#0      ATGAG-GCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT 168
consensus_4348#1      ATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT 180
                      ***** ******************************************************

consensus_4348#0      GA-GCAC-GGCGTAGCCGAG-CAGGCGGTAC----GCGGCGACGAATCCCAGCATGAC-G 220
consensus_4348#1      GATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTG 240
                      ** **** ** ********  **********    * *  ****************** *

consensus_4348#0      CCCAC-GTTGCGCCACCGG--CACTC-GTC-GCCGA-GCCCCTCCCGG--CGCAGCACCT 272
consensus_4348#1      CCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCT 300
                      ***** *********** *  ***** *** ***** **********    *********

consensus_4348#0      CGTC-TCCG----GTGGCCAC-GCA-GGCGCCCATCACCCGC----GCCACGCACCTCCC 321
consensus_4348#1      CGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCA 360
                      **** ****    *** **** *** ****************     *  * ***  ** 

consensus_4348#0      CCCGCCCGC-GAACTC--GTTCACCAGCAGC-GCCTC--GAAC-GGCCACTTG-AACAGC 373
consensus_4348#1      CCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGC 420
                      **** **** ******  ************* *****  **** ** ****** ******

consensus_4348#0      GACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCG 433
consensus_4348#1      TN-GGACAGGTTATGTGCATGAGACACCCCNA-AGCACTGGATCTGTG-CAATCTGCCCT 477
                          *  **   ***  **     ***  *   * * * *     * *   *  *  ** 

consensus_4348#0      GAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCC 493
consensus_4348#1      GGACCCTGGCCTGCTGAANTTGACAGTCAGT----------------------------- 508
                      *      **      **      **  *  *                             

consensus_4348#0      GGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACC 553
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      AGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACC 613
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      GGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCC 673
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      ACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGC 733
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG 778
consensus_4348#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)