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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence
[TGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACGATGGGGAAGGTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAGCCCACCCATGCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCACCGGAAAACCCCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCGCCGGTAGAGAAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCGGCCGACGCCGACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCGCTCCCGCCGCACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCCGCGGCGAGGGGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCCGCGCTGCTCGCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAGCTCCTCCCCGTCCTCGCCGACCACGGCGTCAAGGCCGACGCCCCCGTCTACAACGCCCTCATGAAGGCGCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATGAAGGACGACGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCGCGCGCCGGGATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCACTTCCCGGACGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGAACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGATGTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTTGCTTCAGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATTACAATGAAATATGCAAATTCAGATGAATCTGTGATATGAT]
[+] EMBL AK108777 [TGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACGATGGGGAAGGTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAGCCCACCCATGCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCACCGGAAAACCCCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCGCCGGTAGAGAAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCGGCCGACGCCGACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCGCTCCCGCCGCACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCCGCGGCGAGGGGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCCGCGCTGCTCGCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAGCTCCTCCCCGTCCTCGCCGACCACGGCGTCAAGGCCGACGCCCCCGTCTACAACGCCCTCATGAAGGCGCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATGAAGGACGACGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCGCGCGCCGGGATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCACTTCCCGGACGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGAACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGATGTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTTGCTTCAGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATTACAATGAAATATGCAAATTCAGATGAATCTGTGATATGAT]
consensusID : consensus_4351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[GAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATNATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTGGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACAATTCATTTGTTCCCTTTTTGCAGATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGTCAGGGTTTGCCTTTTTTGAGACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGTTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTTCTGAANGTCCATATGGGTCCATCTGTAGGAGACATTAAGCTTTTTAGTAAACTGACTGGTGTCTACTGGGGGTAAAGCAAAAGA]
[+] EMBL CA764698 [GAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATNATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTGGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACAATTCATTTGTTCCCTTTTTGCAGATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGTCAGGGTTTGCCTTTTTTGAGACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGTTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTTCTGAANGTCCATATGGGTCCATCTGTAGGAGACATTAAGCTTTTTAGTAAACTGACTGGTGTCTACTGGGGGTAAAGCAAAAGA]
consensusID : consensus_4351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[TTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAGTACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTAGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGCCAGGGTTTGCCTTTTTTGGGACGAAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGNTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTCTGAA]
[+] EMBL CA763887 [TTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAGTACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTAGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGCCAGGGTTTGCCTTTTTTGGGACGAAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGNTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTCTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 TGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACGATGGGGAAG 60
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 GTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAGCCCACCCAT 120
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 GCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCACCGGAAAACC 180
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 CCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCGCCGGTAGAG 240
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ----------------------------TTTACAAATCCATGGTTGGTGCCGCGATGAAG 32
consensus_4351#0 AAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCGGCCGACGCC 300
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 CTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAGTACCG 92
consensus_4351#0 GACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCGCTCCCGCCG 360
consensus_4351#1 --------------------------------GAGCAAGAGCTTTGCGGAGGTGACG--- 25
consensus_4351#2 GATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACG--- 149
consensus_4351#0 CACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCCGCGGCGAGG 420
** * *** * * * * **
consensus_4351#1 ---TTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATNATAAAGT 82
consensus_4351#2 ---TTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGT 206
consensus_4351#0 GGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCCGCGCTGCTC 480
* * ****** * ***** * * * ** *
consensus_4351#1 AGGCTGCATGGC-CAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTGG-------C 134
consensus_4351#2 AGGCTGCATGGC-CAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTAG-------C 258
consensus_4351#0 GCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAGCTCCTCCCC 540
**** * * * ** * * ** * * * ** ** *
consensus_4351#1 ATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAA 194
consensus_4351#2 ATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAA 318
consensus_4351#0 GTCCTCGCCGACCACGGCGTCAAGGCC-GACGCCCCCGTCTACAACGCCCTCATGAAGGC 599
* * ** * * *** * ** * * ** * * * **** *
consensus_4351#1 AGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACA 254
consensus_4351#2 AGAT-------------------------------------------------------- 322
consensus_4351#0 GCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATGAAGGACGA 659
*
consensus_4351#1 ATTCATTTGTTCCCTTTTTG-CAGATCCAATATTTATGAAAGCA-CAGCTTGATTACTTG 312
consensus_4351#2 ------------------------ATCCAATATTTATGAAAGCA-CAGCTTGATTACTTG 357
consensus_4351#0 CGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCGCGCGCCGG 719
* *** * * * * * * * *
consensus_4351#1 AATGGTCTGCAT--CAGATGTTTAT----ACCCTTTTGTTGGTACCGACTACT----GAG 362
consensus_4351#2 AATGGTCTGCAT--CAGATGTTTAT----ACCCTTTTGTTGGTACCGACTACT----GAG 407
consensus_4351#0 GATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCACTTCCCGGA 779
****** ** ** *** ** * * * * * * * *** *
consensus_4351#1 CAACTTCATACTCCCTCCGTCACAAAAAAAAA--------AAGACAGATACATAGTCAGG 414
consensus_4351#2 CAACTTCATACTCCCTCCGTCACAAAAAAAAA--------AAGACAGATACATAGCCAGG 459
consensus_4351#0 CGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGC 839
* * *** * * * ** ** * *** ** * * **
consensus_4351#1 GTTTGCCTTTTTTGAG---ACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAG 471
consensus_4351#2 GTTTGCCTTTTTTGGG---ACGAAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAG 516
consensus_4351#0 GCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGAACATACAA 899
* **** * * * * * * *** * ** * * ** ** ** **
consensus_4351#1 CAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCT 531
consensus_4351#2 CAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCT 576
consensus_4351#0 CACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGATGTTTACAA 959
** * ** * * * * * * ** ** * * * * ***
consensus_4351#1 ATTGGTGTCC--CCCCACTTTGGTCCCTCTGGGATCAGTTT-TCCTGTAAATGTCTGAAT 588
consensus_4351#2 ATTGGTGTCC--CCCCACTTTGGTCCCTCTGGGATCAGNTT-TCCTGTAAATGTCTGAAT 633
consensus_4351#0 ATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGC 1019
** ** ** * ** * * * *** ** * * * *** *
consensus_4351#1 AAATCATCCAAATCTCAATTTTCTGAANGTCCATATGG-GTCCATCTGTAGGA--GACAT 645
consensus_4351#2 AAATCATCCAAATCTCAATTT-CTGAA--------------------------------- 659
consensus_4351#0 GTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAG 1079
** * * * * *
consensus_4351#1 TAAGCTTTTTAGTAAACTGACTGGTGTCTACTGGGGGTAAAGCAAAAGA----------- 694
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 CAAGAGCTTTGCGGAGGTGAC-GTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGC 1138
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 ACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTTGCTTC 1198
consensus_4351#1 ------------------------------------------------------------
consensus_4351#2 ------------------------------------------------------------
consensus_4351#0 AGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATTACAAT 1258
consensus_4351#1 -----------------------------------
consensus_4351#2 -----------------------------------
consensus_4351#0 GAAATATGCAAATTCAGATGAATCTGTGATATGAT 1293
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||