These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTGGGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG] [+] EMBL CB653446 [CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTGGGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG] [+] EMBL CF319595 [ GGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCA ] consensusID : consensus_4352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [GCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCA] [+] EMBL CF322993 [GCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4352#0 CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCC 60 consensus_4352#1 ------------------------------------------------------GCTTCC 6 ****** consensus_4352#0 CCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTC 120 consensus_4352#1 CCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTC 66 ************************************************************ consensus_4352#0 TGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCC 180 consensus_4352#1 TGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCC 126 ************************************************************ consensus_4352#0 TTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGG 240 consensus_4352#1 TTCAAGG-----------------CGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGG 169 ******* ************************************ consensus_4352#0 TCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTC 300 consensus_4352#1 TCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTC 229 ************************************************************ consensus_4352#0 TGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTC 360 consensus_4352#1 TGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTC 289 ************************* ********************************** consensus_4352#0 CTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGA 420 consensus_4352#1 CTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGA 349 ************************************************************ consensus_4352#0 GCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGA 480 consensus_4352#1 GCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGA 409 ************************************************************ consensus_4352#0 TATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAA 540 consensus_4352#1 TATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAA 469 ************************************************************ consensus_4352#0 CAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCC 600 consensus_4352#1 CAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCC 529 ************************************************************ consensus_4352#0 CATCAACGGTGGG-AAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTC 659 consensus_4352#1 CATCAACGGTGGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTC 589 ************* ********************************************** consensus_4352#0 TAAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTG 719 consensus_4352#1 TAAAGAAGCTAGCATATGAGCA-------------------------------------- 611 ********************** consensus_4352#0 GGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG 757 consensus_4352#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||