These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence [TGACTGGACTGAAGGAGTAGAAAGAACGACGCCTCCACCACGTCCTCCCGCGGCATCAGCGGCTCTCAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCTCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATCTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCAGCATCACGTGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGTGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGGGCACTCAAAG-AATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGCTTTGCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAATTGAGTGTGTGTGTGTGAGAGAGAAATGAGAAGGGGAGCAGTGACCACTAGCCAGTACACGGCGAGGCAATAGGCGATGGGCTCGGAGTCTTGCCTCTGCAAGGGTCTCCACTGGTTGATCTGCCCATTGGTGTTTCCTGTCGTTCACTTTTGGTCGTTGAACTCCCATGGCTCATTGGATGGCACCTCACTTGTCCACGGTGGGGCAATGAACTCAGATATCANCGTCTGCGAAGATTGCTGCCACTGATCTACCCACTGGTCCCCATTGTGGCGTTTGGATCNAACTCATCTATGAATAAAAATTGGTTTGAATGCTATCNAAGTTCCCAATGCTTGGATTCCAACTCTTTTG] [+] EMBL CF314012 [TGACTGGACTGAAGGAGTAGAAAGAACGACGCCTCCACCACGTCCTCCCGCGGCATCAGCGGCTCTCAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCTCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATCTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCAGCATCACGTGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGTGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGGGCACTCAAAG AATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGCTTTGCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAATTGAGTGTGTGTGTGTGAGAGAGAAATGAGAAGGGGAGCAGTGACCACTAGCCAGTACACGGCGAGGCAATAGGCGATGGGCTCGGAGTCTTGCCTCTGCAAGGGTCTCCAC ] [+] EMBL AF074756 [ CGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCAC CGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTACGTTGAGT AGCATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGTGCGCTCAAAGAAATTCTTTGCTGATAGTCTANAAAACATTTGTGAAGCAAAGTGCAGGCTTTTCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAATTGA GTGTGTGTGTGAGAGANAAATGAGAAGTGGAGCAGTGACCACTANCCAGTNCACGGCGAAGCAATAGGCGAAGGGCTCGGANTTTTGCCTCTGCTAAGGTCTCCACTGGTTGATCTGCCCATTGGTGTTTCCTGTCGTTCACTTTTGGTCGTTGAACTCCCATGGCTCATTGGATGGCACCTCACTTGTCCACGGTGGGGCAATGAACTCAGATATCANCGTCTGCGAAGATTGCTGCCACTGATCTACCCACTGGTCCCCATTGTGGCGTTTGGATCNAACTCATCTATGAATAAAAATTGGTTTGAATGCTATCNAAGTTCCCAATGCTTGGATTCCAACTCTTTTG] consensusID : consensus_4354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [CAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGTGCGCTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGACAAACATGAAAGAAGCTAAGCACCGAGTTGAAAAGGACCATTCAACTGCTCAGAGCTCAGGGAAAAGTATTTTCATCACTCGCGGTTGGACACATATATGGCCTCTTATATGGACATCTTGCTCATGTTGCTCAGCAGCAAAAACTTGCCAAAGTTCATCCGGGAAAGGAGTATTTTCATCACTCGGTGACATGCAAGAAATGAGTGGATATCTAACCGAGTGATGAAAATCCATCTCCATTTCATCGTGCTGTAGTAGCAGATCGAAGAAACTGAGTAACACCATATGGGCAGGGCCAGACGCAGNTGCTTATCCTGGTTATTGNGGNGGCTATTACGGAGTACTATACCTACCTATCTTTGNGCTTAGTTTCGACGCGCTTGATCGCTTATAATATATCTAGGTGGGGTTTCATC] [+] EMBL CA766894 [CAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGTGCGCTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGACAAACATGAAAGAAGCTAAGCACCGAGTTGAAAAGGACCATTCAACTGCTCAGAGCTCAGGGAAAAGTATTTTCATCACTCGCGGTTGGACACATATATGGCCTCTTATATGGACATCTTGCTCATGTTGCTCAGCAGCAAAAACTTGCCAAAGTTCATCCGGGAAAGGAGTATTTTCATCACTCGGTGACATGCAAGAAATGAGTGGATATCTAACCGAGTGATGAAAATCCATCTCCATTTCATCGTGCTGTAGTAGCAGATCGAAGAAACTGAGTAACACCATATGGGCAGGGCCAGACGCAGNTGCTTATCCTGGTTATTGNGGNGGCTATTACGGAGTACTATACCTACCTATCTTTGNGCTTAGTTTCGACGCGCTTGATCGCTTATAATATATCTAGGTGGGGTTTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4354#0 TGACTGGACTGAAGGAGTAGAAAGAACGACGCCTCCACCACGTCCTCCCGCGGCATCAGC 60 consensus_4354#1 ------------------------------------------------------------ consensus_4354#0 GGCTCTCAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATC 120 consensus_4354#1 ------CAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATC 54 ****************************************************** consensus_4354#0 CAGCCGCGCCACCGCTCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCG 180 consensus_4354#1 CAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCG 114 *************** ******************************************** consensus_4354#0 GCGGCGGCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAG 240 consensus_4354#1 GCGGCG---------GCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAG 165 ****** ********************************************* consensus_4354#0 GTTGACGGAGAGAAAACTACAATATGCGCGAATCTAATGGAGTTCGTTCAGATGGGATTA 300 consensus_4354#1 GTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTA 225 ********************************* ************************** consensus_4354#0 CGTTGAGTAGCAGCATCACGTGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTG 360 consensus_4354#1 CGTTGAGTAGC---ATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTG 282 *********** ***** **************************************** consensus_4354#0 CATGACTGTGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATG 420 consensus_4354#1 CATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATG 342 ******** *************************************************** consensus_4354#0 GTTTTATCTGTGCGACTGGGCACTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTG 480 consensus_4354#1 GTTTTATCTGTGCGACTGTGCGCTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTG 402 ****************** ** ************************************** consensus_4354#0 TGAAGCAAAGTGCAGGCTTTGCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAA 540 consensus_4354#1 TGAAGCAAAGTGCAGGACAAACATGAAAGAAGCTAAGCACCGAGTTGAAAAGGACC--AT 460 **************** * * * * * * * * ** ** * consensus_4354#0 TTGAGTGTGTGTGTGTGAGAGAGAAATGAGAAGGGGAGCAGTGACCACTAGCCA-GTACA 599 consensus_4354#1 TCAACTGCTCAGAGCTCAGGGAAAAGT---ATTTTCATCACTCGCGGTTGGACACATATA 517 * * ** * ** ** ** * * * ** * * * * ** ** * consensus_4354#0 CGGCGAGGCA-ATAGGCGATGGGCTCGGAGTCTTGCCTCTGCAAGGGTCTCCACTGGTTG 658 consensus_4354#1 TGGCCTCTTATATGGACATCTTGCTCAT-GTTGCTCAGCAGCAAAAACTTGCCAAAGTTC 576 *** * ** * * **** ** * * **** * * *** consensus_4354#0 ATCTGCCCATTGGTGTTTCCTGTCGTTCACTTTTGGTCGTTGAACTCCC--ATGGCTCAT 716 consensus_4354#1 ATCCGGGAAAGGAGTATTTTCATCACTCGGTGACATGCAAGAAATGAGTGGATATCTAAC 636 *** * * * ** ** ** * * ** ** ** * consensus_4354#0 TGGATGGCA---------CCTCACTTGTCCACGGTGGGGCAAT--------GAACTCAGA 759 consensus_4354#1 CGAGTGATGAAAATCCATCTCCATTTCATCGTGCTGTAGTAGCAGATCGAAGAAACTGAG 696 * ** * ** ** * * ** * * *** consensus_4354#0 TATCANCGTCTGCGAAGATTGCTGCCACTGATCTACCCACTGGTCCCCATTGTGGCGTTT 819 consensus_4354#1 TAACACCATATGGGCAGGGC-CAGACGCAGNTGCTTATCCTGGTTATTGNGGNGGCTATT 755 ** ** * * ** * ** * * * * * * ***** * *** ** consensus_4354#0 -----GGATCNAACTCATCTATGAATAAAAATTGGTTTGAATGCTATCNAA-GTTCCCAA 873 consensus_4354#1 ACGGAGTACTATACCTACCTATCT-TTGNGCTTAGTTTCGACGCGCTTGATCGCTTATAA 814 * * ** * **** * ** **** * ** * * * * ** consensus_4354#0 TGCTTGGATTCCAACTCTTTTG 895 consensus_4354#1 TATATCTAGGTGGGGTTTCATC 836 * * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||