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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2190 fasta sequence
[ATACATTGTTCTTGATTTATTGCAAATGCAAAGCTTGGAAGACCAAAGAGATGCTAATTTTGGGCTTCCTAAAGAAGAATCATCAATTAAAGGAAGATGTCTTGTGGCTGCCATTAAGGTAATAGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGAACAGATGACCTCAAAGAATATAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGCGCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCTCGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGGCTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTTCTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATTGAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATGTTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTTTAACACACGGAATTCAT-AACTCCAGTTCGTATCACTGCATCATGGGCCTTGGCAAATCTTTGCTCTTCTATTCGTTTTAGAGCATTAGATACCAATCCCTCTGCAGGTGTACTAGATAAATCAGCCATATCATTGCTGGTTGAAATTGCTTTGCGCCTTGCTAAAGATGGTGAAAAGGTAAAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCATTCTGACACAGTTGATGACCCAAGTAATTCCGTTCTCTGTGGAGATCCTGTCTGGCTTGAAAGGATGGTACATGCTTTGATGTCCTGTGTGACAACAGGAAATGTAAAGGTTCAATGGAATGTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCTTGGGCATCAAGTGTTTATAGCATACTTCTGCTACTACTCCGTGACTCAAACAATTACAAGATAAGGATGCATGCAGCTGTTGCCTTAGCAGTTCCAGTCTCACGGCTTGATTATGGTAGCTCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGTTTATCATCACCTTCAAATTTCAAACATAAAGGCAACCTTGAGAAACAGGTTACATTTACTGCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTTATCAAGAAAGCATCCTTTCTAGAAGACTGGCTGAAGTCATTGTTCTCATTGTTCAATAATGTTGAGGACCAGCCTTTGGCAAATGAGGCCATAAATGACGAGGATGGTTTCAGCCCAAACGTGGCACAAAAAGCTATGTTGTCTTCTGCTGTGAAGTCCTTGCTCGACATATATACAAGTGAAAATCAGCACACTGTTGCTCAGAGATTTGAGCAATTGGCAAGAAGCCTAGAATTATAGTGTGAATGACAAAACATAGATGGTGGTCTCGATCCCCATTAACAAGCAGCATGACAGTGGCCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAGAGAGGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGATGATACCAGACGTTGGACATTATGTTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGGGGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATTGTAAAATAGCTTTACCTGTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATCTTCCACAAATTTTGTATGTACATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAGATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCACTAGCTTGATGATTGTTCCTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTAATGCAACAGAAAATGAATGCCAGCCATTTC]
[+] EMBL AK065666 [ATACATTGTTCTTGATTTATTGCAAATGCAAAGCTTGGAAGACCAAAGAGATGCTAATTTTGGGCTTCCTAAAGAAGAATCATCAATTAAAGGAAGATGTCTTGTGGCTGCCATTAAGGTAATAGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGAACAGATGACCTCAAAGAATATAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGCGCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCTCGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGGCTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTTCTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATTGAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATGTTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTTTAACACACGGAATTCAT AACTCCAGTTCGTATCACTGCATCATGGGCCTTGGCAAATCTTTGCTCTTCTATTCGTTTTAGAGCATTAGATACCAATCCCTCTGCAGGTGTACTAGATAAATCAGCCATATCATTGCTGGTTGAAATTGCTTTGCGCCTTGCTAAAGATGGTGAAAAGGTAAAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCATTCTGACACAGTTGATGACCCAAGTAATTCCGTTCTCTGTGGAGATCCTGTCTGGCTTGAAAGGATGGTACATGCTTTGATGTCCTGTGTGACAACAGGAAATGTAAAGGTTCAATGGAATGTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCTTGGGCATCAAGTGTTTATAGCATACTTCTGCTACTACTCCGTGACTCAAACAATTACAAGATAAGGATGCATGCAGCTGTTGCCTTAGCAGTTCCAGTCTCACGGCTTGATTATGGTAGCTCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGTTTATCATCACCTTCAAATTTCAAACATAAAGGCAACCTTGAGAAACAGGTTACATTTACTGCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTTATCAAGAAAGCATCCTTTCTAGAAGACTGGCTGAAGTCATTGTTCTCATTGTTCAATAATGTTGAGGACCAGCCTTTGGCAAATGAGGCCATAAATGACGAGGATGGTTTCAGCCCAAACGTGGCACAAAAAGCTATGTTGTCTTCTGCTGTGAAGTCCTTGCTCGACATATATACAAGTGAAAATCAGCACACTGTTGCTCAGAGATTTGAGCAATTGGCAAGAAGCCTAGAATTATAGTGTGAATGACAAAACATAGATGGTGGTCTCGATCCCCATTAACAAGCAGCATGACAGTGGCCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAGAGAGGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGATGATACCAGACGTTGGACATTATGTTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGGGGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATTGTAAAATAGCTTTACCTGTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATCTTCCACAAATTTTGTATGTACATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAGATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCACTAGCTTGATGATTGTTCCTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTAATGCAACAGAAAATGAATGCCAGCCATTTC]
[+] EMBL CF323088 [ TTCAAGGGAACAGATGACCTCAAAGAATATAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGCGCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCTCGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGGCTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTTCTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATTGAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATGTTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTTTAACACACGGAATTCATCAACTCCAGTTCGTATCACTGCATCAT ]
consensusID : consensus_4357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence
[TATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATTTTCCACAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAAAAAAAAAACCCCTGTCCATGCCGTTACTTTTTTTTT]
[+] EMBL CF330414 [TATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATTTTCCACAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAAAAAAAAAACCCCTGTCCATGCCGTTACTTTTTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4357#0 ATACATTGTTCTTGATTTATTGCAAATGCAAAGCTTGGAAGACCAAAGAGATGCTAATTT 60
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TGGGCTTCCTAAAGAAGAATCATCAATTAAAGGAAGATGTCTTGTGGCTGCCATTAAGGT 120
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 AATAGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGAACAGATGACCTCAAAGAATA 180
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGC 240
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCT 300
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 CGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGG 360
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 CTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTT 420
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 CTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATT 480
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATG 540
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTT 600
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TAACACACGGAATTCATAACTCCAGTTCGTATCACTGCATCATGGGCCTTGGCAAATCTT 660
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TGCTCTTCTATTCGTTTTAGAGCATTAGATACCAATCCCTCTGCAGGTGTACTAGATAAA 720
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TCAGCCATATCATTGCTGGTTGAAATTGCTTTGCGCCTTGCTAAAGATGGTGAAAAGGTA 780
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 AAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCAT 840
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TCTGACACAGTTGATGACCCAAGTAATTCCGTTCTCTGTGGAGATCCTGTCTGGCTTGAA 900
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 AGGATGGTACATGCTTTGATGTCCTGTGTGACAACAGGAAATGTAAAGGTTCAATGGAAT 960
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCT 1020
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TGGGCATCAAGTGTTTATAGCATACTTCTGCTACTACTCCGTGACTCAAACAATTACAAG 1080
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 ATAAGGATGCATGCAGCTGTTGCCTTAGCAGTTCCAGTCTCACGGCTTGATTATGGTAGC 1140
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGT 1200
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TTATCATCACCTTCAAATTTCAAACATAAAGGCAACCTTGAGAAACAGGTTACATTTACT 1260
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTT 1320
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 ATCAAGAAAGCATCCTTTCTAGAAGACTGGCTGAAGTCATTGTTCTCATTGTTCAATAAT 1380
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GTTGAGGACCAGCCTTTGGCAAATGAGGCCATAAATGACGAGGATGGTTTCAGCCCAAAC 1440
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GTGGCACAAAAAGCTATGTTGTCTTCTGCTGTGAAGTCCTTGCTCGACATATATACAAGT 1500
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GAAAATCAGCACACTGTTGCTCAGAGATTTGAGCAATTGGCAAGAAGCCTAGAATTATAG 1560
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 TGTGAATGACAAAACATAGATGGTGGTCTCGATCCCCATTAACAAGCAGCATGACAGTGG 1620
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 CCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAG 1680
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 AGAGGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGAT 1740
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GATACCAGACGTTGGACATTATGTTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGG 1800
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATTGTAAAATAGCTTTACCT 1860
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 GTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAA 1920
consensus_4357#1 --------------------------------TATGTGTAAATTTTGAGCTTTGTACAAA 28
****************************
consensus_4357#0 GATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAA 1980
consensus_4357#1 GATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAA 88
************************************************************
consensus_4357#0 ATCTTCCACAAATTTTGTATGTACATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAG 2040
consensus_4357#1 ATTTTCCACAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAA---AAAAAAAAAAAC 145
** ********* * * * * * * * * * **
consensus_4357#0 ATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCACTAGCTTGATGATTGTTC 2100
consensus_4357#1 CCCTGTCCATGCCGTTACTTTTTTTTT--------------------------------- 172
***** * * * * * * **
consensus_4357#0 CTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTA 2160
consensus_4357#1 ------------------------------------------------------------
consensus_4357#0 ATGCAACAGAAAATGAATGCCAGCCATTTC 2190
consensus_4357#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||