These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1090 fasta sequence [CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGAAGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAAATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTAGAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACGTTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGTTAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGATGGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCGTTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTTCAGACATTACCCCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATATTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGTAATCTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTTGAGTAATTTAGAT] [+] EMBL AK066394 [CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGAAGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAAATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTAGAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACGTTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGTTAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGATGGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCGTTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTTCAGACATTACCCCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATATTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGTAATCTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTTGAGTAATTTAGAT] consensusID : consensus_436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [AATTTTTAAACCGTTATTTGAATAGGCGATCAGGAACCGTGGATGAGTAGAGCTCGAGGAGTAGTGCAAAATAGACTACAAGTTTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATTGAAACGATGTGGGCCGTTGATCTCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAAAGGGGAACGCTCCTGCAGCCAACCCTAGCCGCCACCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGCCTGTGCTGCTGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTTGCTCCTAACGTGGCCCTGCTGCTGTTGCTGCTGCTTGATCAGAGAGAAGGGTACCGAGAGGGTGT] [+] EMBL CB638397 [AATTTTTAAACCGTTATTTGAATAGGCGATCAGGAACCGTGGATGAGTAGAGCTCGAGGAGTAGTGCAAAATAGACTACAAGTTTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATTGAAACGATGTGGGCCGTTGATCTCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAAAGGGGAACGCTCCTGCAGCCAACCCTAGCCGCCACCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGCCTGTGCTGCTGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTTGCTCCTAACGTGGCCCTGCTGCTGTTGCTGCTGCTTGATCAGAGAGAAGGGTACCGAGAGGGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_436#0 CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTA 60 consensus_436#1 ------------------------------------------------------------ consensus_436#0 TTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGG 120 consensus_436#1 ------------------------------------------------------------ consensus_436#0 CGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGA 180 consensus_436#1 ------------------------------------------------------------ consensus_436#0 AGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAA 240 consensus_436#1 ------------------------------------------------------------ consensus_436#0 ATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTA 300 consensus_436#1 ------------------------------------------------------------ consensus_436#0 GAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACG 360 consensus_436#1 ------------------------------------------------------------ consensus_436#0 TTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGT 420 consensus_436#1 ------------------------------------------------------------ consensus_436#0 TAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACAT 480 consensus_436#1 ------------------------------------------------------------ consensus_436#0 AGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTAT-ATTTGTATGCA-GA 538 consensus_436#1 -------------------------------AATTTTTAAACCGTTATTTGAATAGGCGA 29 ** * ** * ***** ** ** consensus_436#0 TGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGC 598 consensus_436#1 TCAGGAACCGTGGAT----GAGTAGAGCTCGAGGAGTAGTGCAAAATAGACTA--CAAGT 83 * * **** ** * *** * * ** * * * * *** ** ** * consensus_436#0 AAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAA 658 consensus_436#1 TTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATTGAAACGATGTGGGC--CGTTGA- 140 ** * ** * * * * * ** * * ** * * * ** consensus_436#0 ACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGAT 718 consensus_436#1 ---TC------TCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAAAGGGGAACGCT 191 ** ** * * *** *** * *** ** * * *** * * * consensus_436#0 GGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCG 778 consensus_436#1 ---CCTGCAGCCAACCCTAGCCG--CCACCACGCCTTCCGTCCTGCGCTCTTG----CCG 242 ** ** * ** * * * * * *** * * * * * ** *** consensus_436#0 TTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAG 838 consensus_436#1 CTGCCGCTG----TTGACCCGGTTGCTGCCG-CCGTATTTGCGCCGCCGCCATGGCCATA 297 ** *** *** * ** *** * * * * * ** consensus_436#0 TTCAGACATTACC-CCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCC 897 consensus_436#1 CCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCT 357 * ** * ** *** ** ** *** * * * * * * * ** ** * consensus_436#0 TCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATA 957 consensus_436#1 TCCCGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGC-CTGTG 416 ** * ** * * * ** * * ** * ** * consensus_436#0 TTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGT 1017 consensus_436#1 CTGC---TGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTT 473 ** * * * * ** * ** * * * ** * * consensus_436#0 AATCTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTT 1077 consensus_436#1 GCTCCTAACGTGGCCCTGCTGCTGTTGCTGCTGCT-TGATCAGAGAGAAGGGTACCGAGA 532 ** * * * ** * * * * * ** *** * * * * consensus_436#0 GAGTAATTTAGAT 1090 consensus_436#1 GGGTGT------- 538 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||