These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA] [+] EMBL BI812258 [AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA] consensusID : consensus_4360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 509 fasta sequence [TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAACACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACT-ATAAGCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAATGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACAG] [-] EMBL AU077859 [TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAACACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACT ATAAGCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAATGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACA ] [-] EMBL OSS14590A [ nCCTGTACTAAAAAGCNACCCTGATTNCAGCAGAGTAAGTCCGCTAAGGATACAATGAGAAGATATGAAATAAAGGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTNAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGAATGACAACTTTGGTGGAGCCTCAACAACTTCACCGAATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCTGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4360#0 ------------------------------------------------------------ consensus_4360#1 TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAA 60 consensus_4360#0 --------------------------AGGGGTACACAAGACCCTGGTACCT-TAGTAAAG 33 consensus_4360#1 CACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACTATAA 120 * **** ** **** ** ** * consensus_4360#0 CCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGAT 93 consensus_4360#1 GCNACT-CTGA---TTTCAGCA-GAGT---AAGTTCGC--TAAGGATACAATGAGAAGAT 170 * *** **** ***** ** **** ******** ********* ********** consensus_4360#0 ATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGC 153 consensus_4360#1 ATGAAATAAATGGTCACAAT-GATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGC 229 ***************** ** *************************************** consensus_4360#0 CTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCAT 213 consensus_4360#1 CTTGATGTCCAACCCTTGATATTTCTGT-AGTTCTCAATC-GCCTCT-TTTCTT-AGCAT 285 ******** * ** ************ ******* *** ****** ****** ***** consensus_4360#0 CTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTG 273 consensus_4360#1 CTCACGAGT-AGCGT-CTAAAGCATTCTT--CACCTT-AGGGNATG-ACA-ACTTTGGTG 338 ********* ***** ******* ***** ****** **** *** *** ********* consensus_4360#0 GAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGG 333 consensus_4360#1 GAGCCTCAACAACTT-CACCGNAT-TTAACCT---TTTCACGT--CCA-GGGAATTCTGG 390 *************** ***** ** ******* ** ***** *** *********** consensus_4360#0 AAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGT 393 consensus_4360#1 AAGAGTTTCC-ATCTT---GTCGCCCTT-GCGCTT-CTTTTTCT---TTTCATCCAGG-- 439 ********** ** * * ******* ****** ******** ** ****** * consensus_4360#0 GACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCAT 453 consensus_4360#1 ----TACTTCTTCCTTTTCNGCTTCTT--TGAAACTGCAAC-------TGCCTCATCTAA 486 * *** ** **** * ******** ** *** ** * * consensus_4360#0 TGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTC 513 consensus_4360#1 TTCT-TTAAAACGAA-GAT-CCACAG---------------------------------- 509 * ** ********** *** ** *** consensus_4360#0 ATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTAC 573 consensus_4360#1 ------------------------------------------------------------ consensus_4360#0 TGCTTTTCTACCCAAAAAAAAAA 596 consensus_4360#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||