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Oryza sativa
cluster # 4360 cluster # 4360       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4360#0 length = 596 sequences # 1  
consensus_4360#1 length = 509 sequences # 2  

consensusID : consensus_4360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence
                              [AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA]

[+] EMBL BI812258             [AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA]


>consensus_4360#0 AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGT TAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTA TTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTG TGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTC TTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTT AACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCT TTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCT GTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGC TGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCAC CGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA



consensusID : consensus_4360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 509
fasta sequence
                              [TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAACACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACT-ATAAGCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAATGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACAG]

[-] EMBL AU077859             [TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAACACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACT ATAAGCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAATGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACA ]
[-] EMBL OSS14590A            [                                                                                                           nCCTGTACTAAAAAGCNACCCTGATTNCAGCAGAGTAAGTCCGCTAAGGATACAATGAGAAGATATGAAATAAAGGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTNAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGAATGACAACTTTGGTGGAGCCTCAACAACTTCACCGAATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCTGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACAG]


>consensus_4360#1 TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAA CACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACTATAA GCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAA TGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCA ACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTC TAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNA TTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTT CTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTC ATCTAATTCTTTAAAACGAAGATCCACAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4360#0      ------------------------------------------------------------
consensus_4360#1      TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAA 60
                                                                                  

consensus_4360#0      --------------------------AGGGGTACACAAGACCCTGGTACCT-TAGTAAAG 33
consensus_4360#1      CACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACTATAA 120
                                                  *  ****  **        **** ** ** * 

consensus_4360#0      CCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGAT 93
consensus_4360#1      GCNACT-CTGA---TTTCAGCA-GAGT---AAGTTCGC--TAAGGATACAATGAGAAGAT 170
                       * *** ****   ***** ** ****   ********  ********* **********

consensus_4360#0      ATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGC 153
consensus_4360#1      ATGAAATAAATGGTCACAAT-GATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGC 229
                      ***************** ** ***************************************

consensus_4360#0      CTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCAT 213
consensus_4360#1      CTTGATGTCCAACCCTTGATATTTCTGT-AGTTCTCAATC-GCCTCT-TTTCTT-AGCAT 285
                      ******** *   ** ************ ******* *** ****** ****** *****

consensus_4360#0      CTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTG 273
consensus_4360#1      CTCACGAGT-AGCGT-CTAAAGCATTCTT--CACCTT-AGGGNATG-ACA-ACTTTGGTG 338
                      ********* ***** ******* *****  ****** **** *** *** *********

consensus_4360#0      GAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGG 333
consensus_4360#1      GAGCCTCAACAACTT-CACCGNAT-TTAACCT---TTTCACGT--CCA-GGGAATTCTGG 390
                      *************** ***** ** *******   ** *****  *** ***********

consensus_4360#0      AAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGT 393
consensus_4360#1      AAGAGTTTCC-ATCTT---GTCGCCCTT-GCGCTT-CTTTTTCT---TTTCATCCAGG-- 439
                      ********** **  *   * ******* ****** ********   ** ****** *  

consensus_4360#0      GACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCAT 453
consensus_4360#1      ----TACTTCTTCCTTTTCNGCTTCTT--TGAAACTGCAAC-------TGCCTCATCTAA 486
                          * ***     **    ****  *  ********  **       *** **  * * 

consensus_4360#0      TGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTC 513
consensus_4360#1      TTCT-TTAAAACGAA-GAT-CCACAG---------------------------------- 509
                      * ** ********** *** ** ***                                  

consensus_4360#0      ATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTAC 573
consensus_4360#1      ------------------------------------------------------------
                                                                                  

consensus_4360#0      TGCTTTTCTACCCAAAAAAAAAA 596
consensus_4360#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)