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Oryza sativa
cluster # 4362 cluster # 4362       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4362#0 length = 1851 sequences # 3  

consensusID : consensus_4362#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1851
fasta sequence
                              [GGCTTATGGTCTTCATCCACTCCATCCCAAGAACTACATCATATGTTCCCAAATCTATCACCCTCAAGTCTACCTGAAATGAATGACCTTGCAATTCCAGTTTGACCCCGACACACTTTCCTTCACTGCACACTTTCAAACAAAAGCTTCACTTAGGTTCTTATCTTAGATTCCCTTTATACGGAGTCTAGACCTTTTCTTCTTTTACTTCACACACAAAAAAGAAATATTGAAGAATATATAATATATTAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGAAGGTAAGGTGGACAGACCAGAAGAGTAGGGGTGCTTCCGATATCACCATGATCGGTAATGGAACGCTACGCCCTTGCTTTCTTTATGCCTCAAGGGTAATTGAATGAATTGAGGTTTAGTAAAATTCGATTGATCAGAAAGGAAGGGGAAGCTGGTGAATAACTTAACCCATCCTCGCTGGCTGGAGTTAGAGCTTTCTTAGGTTAGGAATCCACATAAGAAAGAAATTCTCATCGTTGACCACGAGCCATTCTAGACAGTGCGGACGGGAAAGCACTTTTTAATGGTTTTGGTAGTTCAATTTCAGTAAATTAGCCAAGGCATAAGGTATGTTTAGACGAATCGGCCCTATTTATCACTCTTGCTACCAGTTGCATAGAACCTATCATAAGCCGTTGTAAACAAAGGATTTTCCTATTAATAATTGGGCCAACCTACCAAATAGTAGGGTTTTTCGCACGGTACGGGAGTAGGTCTCTCCATCTAGGAAAAGCAAAAGCTGGACGATCGAGAGAAAGTAGGCTCATATTCCGGTTCAAGTACAAGTAGAGGATCACGCCCAAGCCTACATAGTTCCATTCCAACCTCCGAGGGTCTCAAGAAATCGACAAGAAAGCAAAGTAATCGGAATTCTTAACTTCGCTGATCCAACAACACCAGTTCCTCGATCTTGAGAGTATTTCAGTACTGGTACTTCGGAATCTGGAGCAAGCAGGTTTCATTCCTGGTAAAGGTGATTGGTCGGTACTCCCCTCTGCCAACCCACGAGCTAAAGGAAAAGGAAAGAGGAGAAGGAAGTAGACAAAAGTCGTGATTTCTTCATTACCGGAGCCTTCTCGGGTAGTCTACTTATGACATGGCTCGTTCAGAGGGCTCTTCGCGCTGTCTTCAATATTACTATTTCTCCAAACCAACCAGTAGTAGAAATTAAGAAATGGTAAGATTTGAGACTATGAAAGACCCGTTTGTTTACCAATTCGTCAACTATAAAGAATTTGTTACGAAATGAATGAGCAAACCAGCAGAACCAAGAAATGGGAGGGATGGGGTTTAAGGATTTGAATTATTTAACCTCCTAGCGAGACAAGCGTGGAGAATGCTGCAAGAACAAGAAAGTTTGAGCGCAAGGGTGCGAAATGTATTTCCCTGATGAAGACTTCCTAAGAGCAGACTTGGTTCAACTGTATTGATGTACAGAATCAGCGGATCTTGCTTGTGTCACAAGAGTGTTGTCCTCTATATTTACGTAATAAAAGGAGATCCCTCTGGCCAAACCAACTACGAAGTACGAGCAGTGGGCTAAGATAAAAGCTAGGAAGTTGGCATCGGGAAGTAAGAAGTTCTTGCTAGACTGAAGATGATCAATGAAAGATAGGGTTTGACAAACAAGCTGGGGTAAACGGATTCTGTTAGGAAGAAGAAGAGCAGGATGCAGGTACTCTTTAGTAAAGAAGGAACAATCCTCGTATTGAAACCGGTCGAGGAATATCCCTCACCCTCGTATTTGAAAAGAAGTGAATCAAATACAATAGTAGGTAGGGAAAGAAAAGCCATCCTTTGAGTA]

[+] EMBL AK064483             [GGCTTATGGTCTTCATCCACTCCATCCCAAGAACTACATCATATGTTCCCAAATCTATCACCCTCAAGTCTACCTGAAATGAATGACCTTGCAATTCCAGTTTGACCCCGACACACTTTCCTTCACTGCACACTTTCAAACAAAAGCTTCACTTAGGTTCTTATCTTAGATTCCCTTTATACGGAGTCTAGACCTTTTCTTCTTTTACTTCACACACAAAAAAGAAATATTGAAGAATATATAATATATTAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGAAGGTAAGGTGGACAGACCAGAAGAGTAGGGGTGCTTCCGATATCACCATGATCGGTAATGGAACGCTACGCCCTTGCTTTCTTTATGCCTCAAGGGTAATTGAATGAATTGAGGTTTAGTAAAATTCGATTGATCAGAAAGGAAGGGGAAGCTGGTGAATAACTTAACCCATCCTCGCTGGCTGGAGTTAGAGCTTTCTTAGGTTAGGAATCCACATAAGAAAGAAATTCTCATCGTTGACCACGAGCCATTCTAGACAGTGCGGACGGGAAAGCACTTTTTAATGGTTTTGGTAGTTCAATTTCAGTAAATTAGCCAAGGCATAAGGTATGTTTAGACGAATCGGCCCTATTTATCACTCTTGCTACCAGTTGCATAGAACCTATCATAAGCCGTTGTAAACAAAGGATTTTCCTATTAATAATTGGGCCAACCTACCAAATAGTAGGGTTTTTCGCACGGTACGGGAGTAGGTCTCTCCATCTAGGAAAAGCAAAAGCTGGACGATCGAGAGAAAGTAGGCTCATATTCCGGTTCAAGTACAAGTAGAGGATCACGCCCAAGCCTACATAGTTCCATTCCAACCTCCGAGGGTCTCAAGAAATCGACAAGAAAGCAAAGTAATCGGAATTCTTAACTTCGCTGATCCAACAACACCAGTTCCTCGATCTTGAGAGTATTTCAGTACTGGTACTTCGGAATCTGGAGCAAGCAGGTTTCATTCCTGGTAAAGGTGATTGGTCGGTACTCCCCTCTGCCAACCCACGAGCTAAAGGAAAAGGAAAGAGGAGAAGGAAGTAGACAAAAGTCGTGATTTCTTCATTACCGGAGCCTTCTCGGGTAGTCTACTTATGACATGGCTCGTTCAGAGGGCTCTTCGCGCTGTCTTCAATATTACTATTTCTCCAAACCAACCAGTAGTAGAAATTAAGAAATGGTAAGATTTGAGACTATGAAAGACCCGTTTGTTTACCAATTCGTCAACTATAAAGAATTTGTTACGAAATGAATGAGCAAACCAGCAGAACCAAGAAATGGGAGGGATGGGGTTTAAGGATTTGAATTATTTAACCTCCTAGCGAGACAAGCGTGGAGAATGCTGCAAGAACAAGAAAGTTTGAGCGCAAGGGTGCGAAATGTATTTCCCTGATGAAGACTTCCTAAGAGCAGACTTGGTTCAACTGTATTGATGTACAGAATCAGCGGATCTTGCTTGTGTCACAAGAGTGTTGTCCTCTATATTTACGTAATAAAAGGAGATCCCTCTGGCCAAACCgttctacat                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF306161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAAAGGAAACAGGAGAAGGAAGTAGACAAAAGTCGTGATTTCTTCATTACCGGAGCCTTCTCGGGTAGTCTACTTATGACATGGCTCGTTCAGAGGGCTCTTCGCGCTGTCTTCAATATTACTATTTCTCCATTTCTTTCAGTAGTAGAAATTAAGAAATGGTAAGATTTGAGACT TGTAATACCCGTTTGTTTACCAATTCGTCAACTATAAAGAATTTGTTACGAAATGAATGAGCAAACCAGCAGAACCAAGAAATGGGAGGGATGGGGTTTAAGGATTTGAATTATTTAACCTCCTAGCGAGACAAGCGTGGAGAATGCTGCAAGAACAAGAAAGTTTGAGCGCAAGGGTGCGAAATGTATTTCCCTGATGAAGACTTCCTAAGAGCAGACTTGGTTCAACTGTATTGATGTACAGAATCAGCGGATCTTGCTTGTGTCACAAGAGTGTTGTCCTCTATATTTACGTAATAAAAGGAGATCCCTCTGGCCAAACCAACTACGAAGTACGAGCAGTGGGCTAAGATAAAAGCTAGGAAGTTGGCATCGGGAAGTAAGA                                                                                                                                                                                                                                  ]
[+] EMBL CF323153             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGAACCAAGAAATGGGAGGGATGGGGTTTAAGGATTTGAATTATTTAACCTCCTAGCGAGACAAGCGTGGAGAATGCTGCAAGAACAAGAAAGTTTGAGCGCAAGGGTGCGAAATGTATTTCCCTGATGAAGACTTCCTAAGAGCAGACTTGGTTCAACTGTATTGATGTACAGAATCAGCGGATCTTGCTTGTGTCACAAGAGTGTTGTCCTCTATATTTACGTAATAAAAGGAGATCCCTCTGGCCAAACCAACTACGAAGTACGAGCAGTGGGCTAAGATAAAAGCTAGGAAGTTGGCATCGGGAAGTAAGAAGTTCTTGCTAGACTGAAGATGATCAATGAAAGATAGGGTTTGACAAACAAGCTGGGGTAAACGGATTCTGTTAGGAAGAAGAAGAGCAGGATGCAGGTACTCTTTAGTAAAGAAGGAACAATCCTCGTATTGAAACCGGTCGAGGAATATCCCTCACCCTCGTATTTGAAAAGAAGTGAATCAAATACAATAGTAGGTAGGGAAAGAAAAGCCATCCTTTGAGTA]


>consensus_4362#0 GGCTTATGGTCTTCATCCACTCCATCCCAAGAACTACATCATATGTTCCCAAATCTATCA CCCTCAAGTCTACCTGAAATGAATGACCTTGCAATTCCAGTTTGACCCCGACACACTTTC CTTCACTGCACACTTTCAAACAAAAGCTTCACTTAGGTTCTTATCTTAGATTCCCTTTAT ACGGAGTCTAGACCTTTTCTTCTTTTACTTCACACACAAAAAAGAAATATTGAAGAATAT ATAATATATTAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGAAGGTAAGGTGGAC AGACCAGAAGAGTAGGGGTGCTTCCGATATCACCATGATCGGTAATGGAACGCTACGCCC TTGCTTTCTTTATGCCTCAAGGGTAATTGAATGAATTGAGGTTTAGTAAAATTCGATTGA TCAGAAAGGAAGGGGAAGCTGGTGAATAACTTAACCCATCCTCGCTGGCTGGAGTTAGAG CTTTCTTAGGTTAGGAATCCACATAAGAAAGAAATTCTCATCGTTGACCACGAGCCATTC TAGACAGTGCGGACGGGAAAGCACTTTTTAATGGTTTTGGTAGTTCAATTTCAGTAAATT AGCCAAGGCATAAGGTATGTTTAGACGAATCGGCCCTATTTATCACTCTTGCTACCAGTT GCATAGAACCTATCATAAGCCGTTGTAAACAAAGGATTTTCCTATTAATAATTGGGCCAA CCTACCAAATAGTAGGGTTTTTCGCACGGTACGGGAGTAGGTCTCTCCATCTAGGAAAAG CAAAAGCTGGACGATCGAGAGAAAGTAGGCTCATATTCCGGTTCAAGTACAAGTAGAGGA TCACGCCCAAGCCTACATAGTTCCATTCCAACCTCCGAGGGTCTCAAGAAATCGACAAGA AAGCAAAGTAATCGGAATTCTTAACTTCGCTGATCCAACAACACCAGTTCCTCGATCTTG AGAGTATTTCAGTACTGGTACTTCGGAATCTGGAGCAAGCAGGTTTCATTCCTGGTAAAG GTGATTGGTCGGTACTCCCCTCTGCCAACCCACGAGCTAAAGGAAAAGGAAAGAGGAGAA GGAAGTAGACAAAAGTCGTGATTTCTTCATTACCGGAGCCTTCTCGGGTAGTCTACTTAT GACATGGCTCGTTCAGAGGGCTCTTCGCGCTGTCTTCAATATTACTATTTCTCCAAACCA ACCAGTAGTAGAAATTAAGAAATGGTAAGATTTGAGACTATGAAAGACCCGTTTGTTTAC CAATTCGTCAACTATAAAGAATTTGTTACGAAATGAATGAGCAAACCAGCAGAACCAAGA AATGGGAGGGATGGGGTTTAAGGATTTGAATTATTTAACCTCCTAGCGAGACAAGCGTGG AGAATGCTGCAAGAACAAGAAAGTTTGAGCGCAAGGGTGCGAAATGTATTTCCCTGATGA AGACTTCCTAAGAGCAGACTTGGTTCAACTGTATTGATGTACAGAATCAGCGGATCTTGC TTGTGTCACAAGAGTGTTGTCCTCTATATTTACGTAATAAAAGGAGATCCCTCTGGCCAA ACCAACTACGAAGTACGAGCAGTGGGCTAAGATAAAAGCTAGGAAGTTGGCATCGGGAAG TAAGAAGTTCTTGCTAGACTGAAGATGATCAATGAAAGATAGGGTTTGACAAACAAGCTG GGGTAAACGGATTCTGTTAGGAAGAAGAAGAGCAGGATGCAGGTACTCTTTAGTAAAGAA GGAACAATCCTCGTATTGAAACCGGTCGAGGAATATCCCTCACCCTCGTATTTGAAAAGA AGTGAATCAAATACAATAGTAGGTAGGGAAAGAAAAGCCATCCTTTGAGTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)