cluster # 4367

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Oryza sativa
cluster # 4367 cluster # 4367 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4367#0 length = 702 sequences # 1

consensus_4367#1 length = 509 sequences # 1
consensus_4367#2 length = 466 sequences # 1

consensusID : consensus_4367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGAATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACGCGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAACAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGAGAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCTAAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGATTGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGATGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTGACACTTCAGCAGGATGCCCATAATCATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGGCCTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGGAACATCTTTGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTGCTCATACTGTGATGGATCAAACGCACTGTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT]

[+] EMBL CB634690             [TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGAATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACGCGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAACAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGAGAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCTAAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGATTGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGATGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTGACACTTCAGCAGGATGCCCATAATCATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGGCCTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGGAACATCTTTGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTGCTCATACTGTGATGGATCAAACGCACTGTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT]




>consensus_4367#0
TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGA
ATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACG
CGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAA
CAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGA
GAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCT
AAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGAT
TGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGA
TGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTGACACTTCAGCAGGATGCCCATAATC
ATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGGC
CTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGGAACATCTTTGAGAGAGATTC
TACCACAGCAAGATGATTATCAACACCATTTTGCTCATACTGTGATGGATCAAACGCACT
GTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT

consensusID : consensus_4367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [GGTGGATGAAGAGCGATACTGCTGCTGCTACTTTCCTGACACTTCAGCAGATTTCCCCTAATCATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGGCCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGGAACATCTTCGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTCCTCGTAGTGCGATGGATCAAGCGCGGTACTAGCAGCTCCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCTAGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTGTCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTCAAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAACTGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACC]

[-] EMBL CA754341             [GGTGGATGAAGAGCGATACTGCTGCTGCTACTTTCCTGACACTTCAGCAGATTTCCCCTAATCATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGGCCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGGAACATCTTCGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTCCTCGTAGTGCGATGGATCAAGCGCGGTACTAGCAGCTCCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCTAGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTGTCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTCAAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAACTGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACC]




>consensus_4367#1
GGTGGATGAAGAGCGATACTGCTGCTGCTACTTTCCTGACACTTCAGCAGATTTCCCCTA
ATCATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATG
GGCCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGGAACATCTTCGAGAGAGA
TTCTACCACAGCAAGATGATTATCAACACCATTTTCCTCGTAGTGCGATGGATCAAGCGC
GGTACTAGCAGCTCCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCTAGGCTTTC
ACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTGTCAGCAGT
CTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTCAAGCTTTC
TTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAACTGAGAAGA
CCGCTCCATTGTTTGCGCTCCAGTAGACC

consensusID : consensus_4367#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCCAAATGCCACTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGGAAGGGCTCTGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTCTGAATAATGAGCTCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAGCTCAACATTTCTGCAGAATCTTCATCAAAAGGACTGCTATACCGGGTTTGGCCTCCCACTACAGGAAAAGGGGGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGTTCCCAAGGGGCTGGTGACTTCATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACAACATGGGAATGTTGGGAAACCGGGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGAAAAATCCCC]

[+] EMBL CA754224             [GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCCAAATGCCACTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGGAAGGGCTCTGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTCTGAATAATGAGCTCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAGCTCAACATTTCTGCAGAATCTTCATCAAAAGGACTGCTATACCGGGTTTGGCCTCCCACTACAGGAAAAGGGGGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGTTCCCAAGGGGCTGGTGACTTCATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACAACATGGGAATGTTGGGAAACCGGGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGAAAAATCCCC]




>consensus_4367#2
GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCCAAATGCCA
CTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGGAAGGGCTC
TGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTCTGAATAAT
GAGCTCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAGCTCAACATTTCT
GCAGAATCTTCATCAAAAGGACTGCTATACCGGGTTTGGCCTCCCACTACAGGAAAAGGG
GGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGTTCCCAAGGGGCTGGTGACTTC
ATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACAACATGGGAATGTTGGGAAACCG
GGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGAAAAATCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4367#0      TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGA 60
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      ATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACG 120
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      CGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAA 180
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      CAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGA 240
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      GAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCT 300
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      --------GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCC 52
                                                                                  

consensus_4367#0      AAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGAT 360
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      AAATGCCACTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGG 112
                                                                                  

consensus_4367#0      TGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGA 420
consensus_4367#1      ------------------------------------------------------GGTGGA 6
consensus_4367#2      AAGGGCTCTGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTC 172
                                                                              *   

consensus_4367#0      TGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTG-ACACTTCAGCAGGATGCCCATAAT 479
consensus_4367#1      TGAAGAGCGATAC---TGCTGCTGCTACTTTCCTG-ACACTTCAGCAGATTTCCCCTAAT 62
consensus_4367#2      TGAATAATGA-GC---TCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAG 228
                      **** *  **  *   * *      * ***   ** **   *  *       *    ** 

consensus_4367#0      CATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGG 539
consensus_4367#1      CATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGG 122
consensus_4367#2      CTCAACATTTCTGCAGA-----ATCTTCATCAAAAG-GACTGCTATACCGGGTT--TGGC 280
                      *   ** **    ****     *     *** *  *  * * ** ** *    *  *** 

consensus_4367#0      CCTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGG-AACATCTTTGAGAGAGAT 598
consensus_4367#1      CCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGG-AACATCTTCGAGAGAGAT 181
consensus_4367#2      CTCCCACTACAGGAA-AAGGGGGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGT 339
                      *   ** * *   ** ** *  **    * *  *  ***** ** * * *   ** *  *

consensus_4367#0      TCTACCACAGCAAGATGATTATC------AACACCATTTTGCTCATACTGTGATGGATCA 652
consensus_4367#1      TCTACCACAGCAAGATGATTATC------AACACCATTTTCCTCGTAGTGCGATGGATCA 235
consensus_4367#2      TCC-CAAGGGGCTGGTGACTTCATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACA 398
                      **  * *  *   * *** *         ** **       *    * *  **   * **

consensus_4367#0      AACGCACTGTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT---------- 702
consensus_4367#1      AGCGCGGTACTAGCAGCT---CCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCT 292
consensus_4367#2      A-CATGGGAATGTTGGGAAACCGGGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGA 457
                      * *       *    *     *      * * *****  *   ** ****          

consensus_4367#0      ------------------------------------------------------------
consensus_4367#1      AGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTG 352
consensus_4367#2      AAAATCCCC--------------------------------------------------- 466
                                                                                  

consensus_4367#0      ------------------------------------------------------------
consensus_4367#1      TCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTC 412
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      ------------------------------------------------------------
consensus_4367#1      AAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAAC 472
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      -------------------------------------
consensus_4367#1      TGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACC 509
consensus_4367#2      -------------------------------------