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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence
[CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTTTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAAGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGTGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGTTTTCGTTTCCAAATAAATGACGTT]
[+] EMBL AK067046 [CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTTTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAAGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGTGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGTTTTCGTTTCCAAATAAATGACGTT]
consensusID : consensus_4373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT]
[+] EMBL CA754098 [ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT]
consensusID : consensus_4373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTNCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAGGTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCATGTCGGTTCG]
[+] EMBL OSC9141 [TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTNCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAGGTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCATGTCGGTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4373#0 -CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT 59
consensus_4373#1 ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT 60
consensus_4373#2 --TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCT 58
********************** ******************************* ***
consensus_4373#0 CCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 119
consensus_4373#1 CCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 120
consensus_4373#2 CCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 118
****************** *****************************************
consensus_4373#0 GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCT 179
consensus_4373#1 GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGG--------------------------- 153
consensus_4373#2 GTNCGTGACGTCAGCATNCTCTGC-GTCCCNGG--------------------------- 150
** ************** ****** * ** **
consensus_4373#0 TTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGA 239
consensus_4373#1 ------------------------------------------------------------
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 ACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTG 299
consensus_4373#1 ---------GTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTG 204
consensus_4373#2 ----------TCGCTGGTGAG-ATGAGGAGGCAGAAGG-GAGGTCC-TGACGTTCCGGTG 197
*********** **************** ******* **** *******
consensus_4373#0 CGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAG 359
consensus_4373#1 CGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAG 264
consensus_4373#2 CGAG-AGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCAT-G 255
**** ***** * * * ** * *** * ** ** * * ** * *** *
consensus_4373#0 CCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGG 419
consensus_4373#1 CCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGG 324
consensus_4373#2 TCGGTTCG---------------------------------------------------- 263
** **
consensus_4373#0 CGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGA 479
consensus_4373#1 CGTGCTCCAG-------------------------------------------------- 334
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 AGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGAC 539
consensus_4373#1 ----------------------------------------------AACGTGGGGCTGAC 348
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 GTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTT 599
consensus_4373#1 GTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTT 408
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 CCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTT 659
consensus_4373#1 CCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTT 468
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 CTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGT 719
consensus_4373#1 CTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGT 528
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 TTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGG 779
consensus_4373#1 TTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGG 588
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 -TGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCT 838
consensus_4373#1 GTGTTAAATT-------------------------------------------------- 598
consensus_4373#2 ------------------------------------------------------------
consensus_4373#0 GTTTTCGTTTCCAAATAAATGACGTT 864
consensus_4373#1 --------------------------
consensus_4373#2 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||