cluster # 4376

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4376 cluster # 4376 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4376#0 length = 515 sequences # 2

consensus_4376#1 length = 334 sequences # 1

consensusID : consensus_4376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 515
fasta sequence

                              [GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCCCACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTATCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAACTATAGATAC-AAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM037867             [GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCCCACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTATCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAACTATAGATAC AAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAAAAAAA                              ]
[+] EMBL CA756846             [                                                                                                                                                                                                                                                                                                             TACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTT AAAAAAAACTATAGATACAAAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4376#0
GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCC
CACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTA
TCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGC
ACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGG
TATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCA
TTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTAT
ATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAA
ACTATAGATACAAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [GCCCCCNCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA]

[+] EMBL AU070993             [GCCCCCNCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA]




>consensus_4376#1
GCCCCCNCCCACCGACAATGTGGCCGCACAAGTCAGCCTGGTGGTCTGGTGGGAACTGAC
ACCACGGTTGCATTCTTTTTAATATGGTATAGTTATAATGTAATTACTCCTTCCGTTCCA
TAATGTAATACCGTATTTCTAGATTCATTACACTATAATATGTCATATCCATCCAAAATC
TCTTATATTATGGGATGGAGAGAGTATATTATAGCATACTATAGCTGCTTCTAAATATTC
TATGAGGGATTTTCTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4376#0      GAATTTGGGCGCCCCCCTTCCTCTTTCCCCCGCAGCCACAGATCCTGCTTTTCCGTCCCC 60
consensus_4376#1      ------------------------------------------------------------
                                                                                  

consensus_4376#0      CACGCGCTAGAATGATCCGGTGCCCGCTCCCANTACCGCGTGGATCCCGGCCACCGCCTA 120
consensus_4376#1      ------------------------------------------------------------
                                                                                  

consensus_4376#0      TCTGCCCCTCACGCATGTGGATCCGGCGCCGGCGCCCCCTCCCACCGACAATGTGGCCGC 180
consensus_4376#1      ---------------------------------GCCCCCNCCCACCGACAATGTGGCCGC 27
                                                       ****** ********************

consensus_4376#0      ACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGG 240
consensus_4376#1      ACAAGTCAGCCTGGTGGTCTGGTGGGAACTGACACCACGGTTGCATTCTTTTTAATATGG 87
                      ************************************************************

consensus_4376#0      TATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCA 300
consensus_4376#1      TATAGTTATAATGTAATTACTCCTTCCGTTCCATAATGTAATACCGTATTTCTAGATTCA 147
                      ************************************************************

consensus_4376#0      TTACACTATAATATGTCATATCCATCCCAAATCTCTTATATTATGGGATGGAGAGAGTAT 360
consensus_4376#1      TTACACTATAATATGTCATATCCATCCAAAATCTCTTATATTATGGGATGGAGAGAGTAT 207
                      *************************** ********************************

consensus_4376#0      ATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAA 420
consensus_4376#1      ATTATAGCATACTATAGCTGCTTCTAAATATTCTATGAGGGATTTTCTAGTTAAAAAAAA 267
                      ************************************************************

consensus_4376#0      ACTATAGATACAAATTCCCTTTCGGATAGAAGGAAGAATAAAAAAGATTACGATGAAAAA 480
consensus_4376#1      A--------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 301
                      *                          * **  ** ** ****** *  *  *  *****

consensus_4376#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 515
consensus_4376#1      AAAAAAAAAAAAAAAAAAAAAAAAAANAANAAA-- 334
                      ************************** ** ***