Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 438 cluster # 438       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_438#0 length = 1498 sequences # 1  
consensus_438#1 length = 390 sequences # 1  

consensusID : consensus_438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1498
fasta sequence
                              [TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCTCCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGCTCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACTTCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTCGCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGCGCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTGAGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAAGAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGGCGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGCCGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGCTGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCCTGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGGCGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACCTCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCAGCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCACGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCTTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTTCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA]

[+] EMBL AK106618             [TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCTCCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGCTCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACTTCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTCGCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGCGCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTGAGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAAGAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGGCGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGCCGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGCTGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCCTGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGGCGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACCTCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCAGCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCACGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCTTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTTCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA]


>consensus_438#0 TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCT CCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGC TCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACT TCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTC GCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGC GCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTG AGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAA GAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGG CGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGC CGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGC TGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCC TGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGG CGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACC TCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCA GCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACC CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGC TGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCC TTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAA AAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGA AGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCAC GTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCT TTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTT CGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA



consensusID : consensus_438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCAAAAAAAAAAAAAAA]

[+] EMBL AU197761             [CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCAAAAAAAAAAAAAAA]


>consensus_438#1 CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTC GGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAAC GTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGG CTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGC TCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGA AAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATA AAAAGAAGTTGTTTCAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_438#0      TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCT 60
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGC 120
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACT 180
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTC 240
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGC 300
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTG 360
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      AGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAA 420
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGG 480
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGC 540
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGC 600
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCC 660
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGG 720
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACC 780
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCA 840
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACC 900
consensus_438#1      -------------------------------------------------------CGACC 5
                                                                            *****

consensus_438#0      CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT 960
consensus_438#1      CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT 65
                     ************************************************************

consensus_438#0      CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT 1020
consensus_438#1      CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT 125
                     ************************************************************

consensus_438#0      GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAA-TTCTCCCCTCTTTCGTCGGCTCGG 1079
consensus_438#1      GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGG 185
                     *********************************** ************************

consensus_438#0      CTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTC 1139
consensus_438#1      CTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTC 245
                     ************************************************************

consensus_438#0      CTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAA 1199
consensus_438#1      CTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAA 305
                     ************************************************************

consensus_438#0      AAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAG 1259
consensus_438#1      AAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAG 365
                     ************************************************************

consensus_438#0      AAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCA 1319
consensus_438#1      AAGTTGTTTCAAAAAAAAAAAAAAA----------------------------------- 390
                     ********** * * *      *                                     

consensus_438#0      CGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTC 1379
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGT 1439
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA 1498
consensus_438#1      -----------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)