Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4380 cluster # 4380       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4380#0 length = 1822 sequences # 3  

consensusID : consensus_4380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1822
fasta sequence
                              [CTCTGCACGAATGGGAAGGGCGATGATATGTGGGAATTTTTTAGGGTGCTCTTAGATAAGGGGTATTGTACAGATGTGAGGGATTACCATTTGGTAGTATCATTCTTAGGCAAGGCTGGGAAGGTGCGAGAGGCATATGATGTACTAAAGGAGGTGAAAAGAAAGAGACCTGAGCCTGACATTTCATCATACAATTCTCTCATGGAGTCACTCTGCAGAAAAAACCTCCTTAGGCCAGCCAAGAAGCTGTGGGATGAAATGTTTACCAGTGGCTGTAGTCCAAATCTGCAGACTTACAATATACTCATAACAAAATTTGCAGAAATCAATGAAAGTGAACAAGCCCAACAACTGTTTGATCGCATGTTCCAGAAAGGAGTGTCCCCTGATGTCACAACATACACTTCAGTCATCAATATGCTGTGCCAAGAAAAGAAATATGAACAGGCTGTGGAGATCTTTACCAAATGTGTGGTGCAGGATACTGAAGTGGCTAGTTCAGTATTAACTGTGTTTATCCTTGCACTCTGTAAACAAGGTAATTTCAAAGGAGCACTGAGTGTTTTATCTTGTATTCCATCTAATGTTGAGAGTGTGAATTCACACGTCATTTTGTTGAAGTGTCTAATAGATGTTGGGGAAGTAGATTTGGCCATTGAGCACATAAAATCGATCAGGAGTAACTTCAGCTCAAGTTTCCAGAATATAATCAATGAGCTCATGGCCTCTCTTTCCACTTCTGCTAGTCTTCAACCTGTCACAAGGTTGATTTCTTATTTGAATTCTCAGGGGATTGTTCACGATGTTGGCCCATGGATGGGGTTGATGGAGCACAATTATGCTTGAAACAAAGTTTTCAATGTTGTGCTGTCGTAAGTTGTAACATGATGGAGTATTTGACACTATTATGAGGTCAGGCCGCAGCTTATTTCAGAAAGGGTGATAGTGATATTTCTTTTGGACACAAAGGGTCAGAATGTTACTAGAGGGAGCAGCAAGTGGAGAGAAATTGCACAGGCAATTCAGAAGAACGAGTCAGGAGTTATCTGGAATCAGAAAAGGAGCAACCAGTGCTCTCAGTTCTCAGTATTCACCAAGTACAGATGGCTGGATATTTTTATGAAAATCGCGTTGGTGATCATTTTCTTCCAAGAACCAGAAATTGGTTAGGTGATGTGCTGCGCAGCAGTTCTATCTCTATGTTCCTGTTGCAAGATTTTGCACAGTGTTTGCTGGTCACTAACAACTGATCCATGTGTCAGTTATGCTTATGCCTGTGAGCACTCAGCAAGGCAGCAAACAAGTTACTCTATCCAAGAAAGCAGATCGTGACTATTATTCTGCTTAGTTCTCACAAAAAGAAAAAAGACTATGATTCTGCTTCTATACTGGGATTTGGCACTGGCAGTGATGGTGAATCAGAATGATTTTTTTTATCAGTTTTGCGGAATGTTAGTCCATTCTGTACTGATCAGTGATCAGAGTGTTGTGTTATAGAGGGCCATCGAAGCAATTCCCTCCGTCCCTGCAGAAAGATGAAAAATGAAAGCTCTCTGAGGGATGCATCACTGTGAACAGGTAGTCGGCATCACCCCGCCATGCCCATGCACATGCACGGACGCTCATAAGTTTGGATTAGGACGCCATTCGCAGGTGTTTTTTTCTTCTTC-TTTTTTTCCTTTTTTTGCGAGGGCACAGATTCTTTGGTATTCTGGTTCAGGTACTACAGATGTGTATGATTTCATAAGTAAAAGTTTGTATTACAGCTTAACCTTGTTGTATCGTCTCGAATGAATGAAGCTCCTGCTAAAGACAAAAAAAA]

[+] EMBL AK108367             [CTCTGCACGAATGGGAAGGGCGATGATATGTGGGAATTTTTTAGGGTGCTCTTAGATAAGGGGTATTGTACAGATGTGAGGGATTACCATTTGGTAGTATCATTCTTAGGCAAGGCTGGGAAGGTGCGAGAGGCATATGATGTACTAAAGGAGGTGAAAAGAAAGAGACCTGAGCCTGACATTTCATCATACAATTCTCTCATGGAGTCACTCTGCAGAAAAAACCTCCTTAGGCCAGCCAAGAAGCTGTGGGATGAAATGTTTACCAGTGGCTGTAGTCCAAATCTGCAGACTTACAATATACTCATAACAAAATTTGCAGAAATCAATGAAAGTGAACAAGCCCAACAACTGTTTGATCGCATGTTCCAGAAAGGAGTGTCCCCTGATGTCACAACATACACTTCAGTCATCAATATGCTGTGCCAAGAAAAGAAATATGAACAGGCTGTGGAGATCTTTACCAAATGTGTGGTGCAGGATACTGAAGTGGCTAGTTCAGTATTAACTGTGTTTATCCTTGCACTCTGTAAACAAGGTAATTTCAAAGGAGCACTGAGTGTTTTATCTTGTATTCCATCTAATGTTGAGAGTGTGAATTCACACGTCATTTTGTTGAAGTGTCTAATAGATGTTGGGGAAGTAGATTTGGCCATTGAGCACATAAAATCGATCAGGAGTAACTTCAGCTCAAGTTTCCAGAATATAATCAATGAGCTCATGGCCTCTCTTTCCACTTCTGCTAGTCTTCAACCTGTCACAAGGTTGATTTCTTATTTGAATTCTCAGGGGATTGTTCACGATGTTGGCCCATGGATGGGGTTGATGGAGCACAATTATGCTTGAAACAAAGTTTTCAATGTTGTGCTGTCGTAAGTTGTAACATGATGGAGTATTTGACACTATTATGAGGTCAGGCCGCAGCTTATTTCAGAAAGGGTGATAGTGATATTTCTTTTGGACACAAAGGGTCAGAATGTTACTAGAGGGAGCAGCAAGTGGAGAGAAATTGCACAGGCAATTCAGAAGAACGAGTCAGGAGTTATCTGGAATCAGAAAAGGAGCAACCAGTGCTCTCAGTTCTCAGTATTCACCAAGTACAGATGGCTGGATATTTTTATGAAAATCGCGTTGGTGATCATTTTCTTCCAAGAACCAGAAATTGGTTAGGTGATGTGCTGCGCAGCAGTTCTATCTCTATGTTCCTGTTGCAAGATTTTGCACAGTGTTTGCTGGTCACTAACAACTGATCCATGTGTCAGTTATGCTTATGCCTGTGAGCACTCAGCAAGGCAGCAAACAAGTTACTCTATCCAAGAAAGCAGATCGTGACTATTATTCTGCTTAGTTCTCACAAAAAGAAAAAAGACTATGATTCTGCTTCTATACTGGGATTTGGCACTGGCAGTGATGGTGAATCAGAATGATTTTTTTTATCAGTTTTGCGGAATGTTAGTCCATTCTGTACTGATCAGTGATCAGAGTGTTGTGTTATAGAGGGCCATCGAAGCAATTCCCTCCGTCCCTGCAGAAAGATGAAAAATGAAAGCTCTCTGAGGGATGCATCACTGTGAACAGGTAGTCGGCATCACCCCGCCATGCCCATGCACATGCACGGACGCTCATAAGTTTGGATTAGGACGCCATTCGCAGGTGTTTTTTTCTTCTTCTTTTTTTTCCTTTTTTTGCGAGGGCACAGATTCTTTGGTATTCTGGTTCAGGTACTACAGATGTGTATGATTTCATAAGTAAAAGTTTGTATTACAGCTTAACCTTGTTGTATCGTCTCGAATGAATGAAGCTCCTGCTAAAGAC        ]
[+] EMBL OSS14324A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCTCTCTGAGGGATGCATCACTGTGAACAGGTAGTCGGCATCACCCCGCCATGCCCATGCACATGCACGGACGCTCATAAGTTTGGATTAGGACGCCATTCGCAGGTGTTTTTTTCTTCTTC TTTTTTTCCTTTTTTTGCGAGGGCACAGATTCTTTGGTATTCTGGTTCAGGTACTACAGATGTGTATNATTTCATAAGTAAAAGTTTGTATTACAGCTTAACCTTGTTGTATCGTCTCG                                 ]
[+] EMBL AU101795             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTCTCTGAGGGATGCATCACTGTGAACAGGTAGTCGGCATCACCCCGCCATGCCCATGCACATGCACGGACGCTCATAAGTTTGGATTAGGACGCCATTCGCAGGTGTTTTTTTCTTCTTC TTTTTTTCCTTTTTTTGCGAGGGCACAGATTCTTTGGTATTCTGGTTCAGGTACTACAGATGTGTATGATTTCATAAGTAAAAGTTTGTATTACAGCTTAACCTTGTTGTATCGTCTCGAATGAATGAAGCTCCTGCTAAAAAAAAAAAAAA]


>consensus_4380#0 CTCTGCACGAATGGGAAGGGCGATGATATGTGGGAATTTTTTAGGGTGCTCTTAGATAAG GGGTATTGTACAGATGTGAGGGATTACCATTTGGTAGTATCATTCTTAGGCAAGGCTGGG AAGGTGCGAGAGGCATATGATGTACTAAAGGAGGTGAAAAGAAAGAGACCTGAGCCTGAC ATTTCATCATACAATTCTCTCATGGAGTCACTCTGCAGAAAAAACCTCCTTAGGCCAGCC AAGAAGCTGTGGGATGAAATGTTTACCAGTGGCTGTAGTCCAAATCTGCAGACTTACAAT ATACTCATAACAAAATTTGCAGAAATCAATGAAAGTGAACAAGCCCAACAACTGTTTGAT CGCATGTTCCAGAAAGGAGTGTCCCCTGATGTCACAACATACACTTCAGTCATCAATATG CTGTGCCAAGAAAAGAAATATGAACAGGCTGTGGAGATCTTTACCAAATGTGTGGTGCAG GATACTGAAGTGGCTAGTTCAGTATTAACTGTGTTTATCCTTGCACTCTGTAAACAAGGT AATTTCAAAGGAGCACTGAGTGTTTTATCTTGTATTCCATCTAATGTTGAGAGTGTGAAT TCACACGTCATTTTGTTGAAGTGTCTAATAGATGTTGGGGAAGTAGATTTGGCCATTGAG CACATAAAATCGATCAGGAGTAACTTCAGCTCAAGTTTCCAGAATATAATCAATGAGCTC ATGGCCTCTCTTTCCACTTCTGCTAGTCTTCAACCTGTCACAAGGTTGATTTCTTATTTG AATTCTCAGGGGATTGTTCACGATGTTGGCCCATGGATGGGGTTGATGGAGCACAATTAT GCTTGAAACAAAGTTTTCAATGTTGTGCTGTCGTAAGTTGTAACATGATGGAGTATTTGA CACTATTATGAGGTCAGGCCGCAGCTTATTTCAGAAAGGGTGATAGTGATATTTCTTTTG GACACAAAGGGTCAGAATGTTACTAGAGGGAGCAGCAAGTGGAGAGAAATTGCACAGGCA ATTCAGAAGAACGAGTCAGGAGTTATCTGGAATCAGAAAAGGAGCAACCAGTGCTCTCAG TTCTCAGTATTCACCAAGTACAGATGGCTGGATATTTTTATGAAAATCGCGTTGGTGATC ATTTTCTTCCAAGAACCAGAAATTGGTTAGGTGATGTGCTGCGCAGCAGTTCTATCTCTA TGTTCCTGTTGCAAGATTTTGCACAGTGTTTGCTGGTCACTAACAACTGATCCATGTGTC AGTTATGCTTATGCCTGTGAGCACTCAGCAAGGCAGCAAACAAGTTACTCTATCCAAGAA AGCAGATCGTGACTATTATTCTGCTTAGTTCTCACAAAAAGAAAAAAGACTATGATTCTG CTTCTATACTGGGATTTGGCACTGGCAGTGATGGTGAATCAGAATGATTTTTTTTATCAG TTTTGCGGAATGTTAGTCCATTCTGTACTGATCAGTGATCAGAGTGTTGTGTTATAGAGG GCCATCGAAGCAATTCCCTCCGTCCCTGCAGAAAGATGAAAAATGAAAGCTCTCTGAGGG ATGCATCACTGTGAACAGGTAGTCGGCATCACCCCGCCATGCCCATGCACATGCACGGAC GCTCATAAGTTTGGATTAGGACGCCATTCGCAGGTGTTTTTTTCTTCTTCTTTTTTTCCT TTTTTTGCGAGGGCACAGATTCTTTGGTATTCTGGTTCAGGTACTACAGATGTGTATGAT TTCATAAGTAAAAGTTTGTATTACAGCTTAACCTTGTTGTATCGTCTCGAATGAATGAAG CTCCTGCTAAAGACAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)