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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2470 fasta sequence
[TTGCAATCCCATCGGCCGGCAGAGCGCGACGGCGGCAGCTCGGCCACCGCCGCGGCATCGCCGCCATGCCGCACTCACTCTCCCTCCTGCTCGCGCCCAGCCGCGCGCTCTCCCTCTCCTCCCCACCGCTCCGCCTCGCCCCAACGCACCCACCACTTCGCCTGCACCACGACGGCGGCCACCTCCTCGTGGGCACGACGAGGCGGCAGGCTCCCTCGCCTCGCCGCCGCCGTCTCCATGCCGCCAGGGCTTCCGCGCCGTCCGCCGCCGCGGCGTCCCCCGTAGGGCCTGCGGGCGAGGGTGGCGAGGTGGGGGGCAGGGCGAGGAAGGCGGCGGGGTACCGGAACAGGTTCCTGGACCTGGCGCGGCTGGGGGCCGTGGCGGAGAGCGCGGCGGAGGCGCTCTTCCGCAGCGAGATTCGCCGGCGGCTGGCCGTCACGGCCGTGCTCATCCTGCTCAGCCGCGTCGGCTACTTCGTCCCGCTTCCCGGGTTCGACCGACGGCTCATCCCCGATTCCTACCTCAGCTTTGCACCCCTTCCTGCAGATGACCTCGGTGATTTTTCATCCGAATTGAAGCTGTCATTTTTCCAGCTCGGAATCAGTCATCAGATTTCAGCATCTATTGTCATGCAGGTTCTCTGTCATGTTCTTCCATCACTTGAAAAACTACGAAAGGAAGGGTTAGATGGACATGAGAAGATCAAAGGCTATATTTGGTGGCTGTCGCTGGGTTTTGCACTTGTGGCGGCTTTTACAGTGTCATGCTACTCACTGCAATATTCTATATATGCTGCAAGTTACAGAGTTAAGCATGTAATGATAACAAGCCTTTTCCTTGTTCTTGGTGCAATGACAATGACATGGATCTGTGACACTATATCGGAATCTGGATTTGGACATGGCTCTTCCTTGATTATCTGTGTGGGAATATTGACTGGTTATACAGACACACTCCACAAGATGTTAACTCAATTTTCAGGAAATTGGTACAGCTGTTGGCCCTACATCTTGGGGATAGCTGGGACTTTTATTTTGGTTACCATGGGAGCAGTACTGGTGACTGAAGGGTGTAGGAAGATAAAGCTTCAGTACTATGGATTTAAATTGGCTTCTGGTGCAAGGAGTGAGAGCTCCCCAGTTACAGAGGTAGAGCCATATATCCCTTTTAACATAAATCCAACTGGGATGCAGCCCTTGCTTACCACCTCATACTTATTAGCTTTTCCAAGCATTATGGCCAGCATTTTTGGTACGCAATTTTGGGAAAGTTTGAAGGAAACGTTGAATCCAAAGACTTCAGTTGGTGGTGGTCCATGAGTTTATTATTTGACATATGCATTTCTTGTCTTCGTCTTCAATATTTTTGACATTGCAAACTTGCCAAAAGAGATATCTGACTACCTGAATAAAATGAGTGCTAGAGTACCGAAGATAAAGCCTGGAAGAGCAACAGTAGAGTATCTTACAAAAATACAAACATCTACACGTTTCTGGGGGGGTATATTGCTGAGCTTGTTGGCGACTTCCTCTTTATTACTTGACCGATATCTCAGGCAGATAAATGAGGGATTTTCTATAGGTTTCACGTCGGTGTTGATTATTGTGGGCTCAATCATCGAGCTGAGAAGGTCTTATCAAGCATACAATGTGATGCCAGCACTAAGCAAAGTTCTAAGGAGATATGGTGCCTGAGGTTATGTACGCCACATATTTGGTTATGATGGTATCATCCACAAGAAGAAGAGGGCCATTTCAAAAAAACTTCAGAGTTTACAGGCTTACAGCCGACTAGATGCTGTGACCTTGATTATTGTCAACAACTTGCAGTACGGTGCAGTAAGAAGAGTTCTATAACCCAGACCAATATTGTGCTTGGGTTGGGATGAGATTAGTATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGATAAAGAAGCACATTTTTCTTTTATTGACAAAAAAAAA]
[+] EMBL AK067298 [TTGCAATCCCATCGGCCGGCAGAGCGCGACGGCGGCAGCTCGGCCACCGCCGCGGCATCGCCGCCATGCCGCACTCACTCTCCCTCCTGCTCGCGCCCAGCCGCGCGCTCTCCCTCTCCTCCCCACCGCTCCGCCTCGCCCCAACGCACCCACCACTTCGCCTGCACCACGACGGCGGCCACCTCCTCGTGGGCACGACGAGGCGGCAGGCTCCCTCGCCTCGCCGCCGCCGTCTCCATGCCGCCAGGGCTTCCGCGCCGTCCGCCGCCGCGGCGTCCCCCGTAGGGCCTGCGGGCGAGGGTGGCGAGGTGGGGGGCAGGGCGAGGAAGGCGGCGGGGTACCGGAACAGGTTCCTGGACCTGGCGCGGCTGGGGGCCGTGGCGGAGAGCGCGGCGGAGGCGCTCTTCCGCAGCGAGATTCGCCGGCGGCTGGCCGTCACGGCCGTGCTCATCCTGCTCAGCCGCGTCGGCTACTTCGTCCCGCTTCCCGGGTTCGACCGACGGCTCATCCCCGATTCCTACCTCAGCTTTGCACCCCTTCCTGCAGATGACCTCGGTGATTTTTCATCCGAATTGAAGCTGTCATTTTTCCAGCTCGGAATCAGTCATCAGATTTCAGCATCTATTGTCATGCAGGTTCTCTGTCATGTTCTTCCATCACTTGAAAAACTACGAAAGGAAGGGTTAGATGGACATGAGAAGATCAAAGGCTATATTTGGTGGCTGTCGCTGGGTTTTGCACTTGTGGCGGCTTTTACAGTGTCATGCTACTCACTGCAATATTCTATATATGCTGCAAGTTACAGAGTTAAGCATGTAATGATAACAAGCCTTTTCCTTGTTCTTGGTGCAATGACAATGACATGGATCTGTGACACTATATCGGAATCTGGATTTGGACATGGCTCTTCCTTGATTATCTGTGTGGGAATATTGACTGGTTATACAGACACACTCCACAAGATGTTAACTCAATTTTCAGGAAATTGGTACAGCTGTTGGCCCTACATCTTGGGGATAGCTGGGACTTTTATTTTGGTTACCATGGGAGCAGTACTGGTGACTGAAGGGTGTAGGAAGATAAAGCTTCAGTACTATGGATTTAAATTGGCTTCTGGTGCAAGGAGTGAGAGCTCCCCAGTTACAGAGGTAGAGCCATATATCCCTTTTAACATAAATCCAACTGGGATGCAGCCCTTGCTTACCACCTCATACTTATTAGCTTTTCCAAGCATTATGGCCAGCATTTTTGGTACGCAATTTTGGGAAAGTTTGAAGGAAACGTTGAATCCAAAGACTTCAGTTGGTGGTGGTCCATGAGTTTATTATTTGACATATGCATTTCTTGTCTTCGTCTTCAATATTTTTGACATTGCAAACTTGCCAAAAGAGATATCTGACTACCTGAATAAAATGAGTGCTAGAGTACCGAAGATAAAGCCTGGAAGAGCAACAGTAGAGTATCTTACAAAAATACAAACATCTACACGTTTCTGGGGGGGTATATTGCTGAGCTTGTTGGCGACTTCCTCTTTATTACTTGACCGATATCTCAGGCAGATAAATGAGGGATTTTCTATAGGTTTCACGTCGGTGTTGATTATTGTGGGCTCAATCATCGAGCTGAGAAGGTCTTATCAAGCATACAATGTGATGCCAGCACTAAGCAAAGTTCTAAGGAGATATGGTGCCTGAGGTTATGTACGCCACATATTTGGTTATGATGGTATCATCCACAAGAAGAAGAGGGCCATTTCAAAAAAACTTCAGAGTTTACAGGCTTACAGCCGACTAGATGCTGTGACCTTGATTATTGTCAACAACTTGCAGTACGGTGCAGTAAGAAGAGTTCTATAACCCAGACCAATATTGTGCTTGGGTTGGGATGAGATTAGTATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGA ]
[-] EMBL CF323601 [ ATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGATAAAGAAGCACATTTTTCTTTTATTGACAAAAAAAAA]
consensusID : consensus_4388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[ATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAANTTGGATCCAATCTCACCCAGNTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGGCAGAACCTGAAGTCTGCAAAATTGGCTGNGTGTTGGGGNTGATTNGNTTGGAACGNTCTNCATCAGAGGNCTGGNCGGGTGCCNANNCCCAAAANNGNNCNGNNNNANNGAAACTTGGGGCCANNTGGGGNNCCCNNTTANNTNNGTGGNCTTCCNTTNCNTTNGGACCCTGCCNNTANNAGANCCCGNGG]
[+] EMBL OSC18771 [ATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAANTTGGATCCAATCTCACCCAGNTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGGCAGAACCTGAAGTCTGCAAAATTGGCTGNGTGTTGGGGNTGATTNGNTTGGAACGNTCTNCATCAGAGGNCTGGNCGGGTGCCNANNCCCAAAANNGNNCNGNNNNANNGAAACTTGGGGCCANNTGGGGNNCCCNNTTANNTNNGTGGNCTTCCNTTNCNTTNGGACCCTGCCNNTANNAGANCCCGNGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4388#0 TTGCAATCCCATCGGCCGGCAGAGCGCGACGGCGGCAGCTCGGCCACCGCCGCGGCATCG 60
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CCGCCATGCCGCACTCACTCTCCCTCCTGCTCGCGCCCAGCCGCGCGCTCTCCCTCTCCT 120
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CCCCACCGCTCCGCCTCGCCCCAACGCACCCACCACTTCGCCTGCACCACGACGGCGGCC 180
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 ACCTCCTCGTGGGCACGACGAGGCGGCAGGCTCCCTCGCCTCGCCGCCGCCGTCTCCATG 240
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CCGCCAGGGCTTCCGCGCCGTCCGCCGCCGCGGCGTCCCCCGTAGGGCCTGCGGGCGAGG 300
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 GTGGCGAGGTGGGGGGCAGGGCGAGGAAGGCGGCGGGGTACCGGAACAGGTTCCTGGACC 360
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TGGCGCGGCTGGGGGCCGTGGCGGAGAGCGCGGCGGAGGCGCTCTTCCGCAGCGAGATTC 420
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 GCCGGCGGCTGGCCGTCACGGCCGTGCTCATCCTGCTCAGCCGCGTCGGCTACTTCGTCC 480
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CGCTTCCCGGGTTCGACCGACGGCTCATCCCCGATTCCTACCTCAGCTTTGCACCCCTTC 540
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CTGCAGATGACCTCGGTGATTTTTCATCCGAATTGAAGCTGTCATTTTTCCAGCTCGGAA 600
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TCAGTCATCAGATTTCAGCATCTATTGTCATGCAGGTTCTCTGTCATGTTCTTCCATCAC 660
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TTGAAAAACTACGAAAGGAAGGGTTAGATGGACATGAGAAGATCAAAGGCTATATTTGGT 720
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 GGCTGTCGCTGGGTTTTGCACTTGTGGCGGCTTTTACAGTGTCATGCTACTCACTGCAAT 780
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 ATTCTATATATGCTGCAAGTTACAGAGTTAAGCATGTAATGATAACAAGCCTTTTCCTTG 840
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TTCTTGGTGCAATGACAATGACATGGATCTGTGACACTATATCGGAATCTGGATTTGGAC 900
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 ATGGCTCTTCCTTGATTATCTGTGTGGGAATATTGACTGGTTATACAGACACACTCCACA 960
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 AGATGTTAACTCAATTTTCAGGAAATTGGTACAGCTGTTGGCCCTACATCTTGGGGATAG 1020
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CTGGGACTTTTATTTTGGTTACCATGGGAGCAGTACTGGTGACTGAAGGGTGTAGGAAGA 1080
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TAAAGCTTCAGTACTATGGATTTAAATTGGCTTCTGGTGCAAGGAGTGAGAGCTCCCCAG 1140
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TTACAGAGGTAGAGCCATATATCCCTTTTAACATAAATCCAACTGGGATGCAGCCCTTGC 1200
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TTACCACCTCATACTTATTAGCTTTTCCAAGCATTATGGCCAGCATTTTTGGTACGCAAT 1260
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TTTGGGAAAGTTTGAAGGAAACGTTGAATCCAAAGACTTCAGTTGGTGGTGGTCCATGAG 1320
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TTTATTATTTGACATATGCATTTCTTGTCTTCGTCTTCAATATTTTTGACATTGCAAACT 1380
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TGCCAAAAGAGATATCTGACTACCTGAATAAAATGAGTGCTAGAGTACCGAAGATAAAGC 1440
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CTGGAAGAGCAACAGTAGAGTATCTTACAAAAATACAAACATCTACACGTTTCTGGGGGG 1500
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 GTATATTGCTGAGCTTGTTGGCGACTTCCTCTTTATTACTTGACCGATATCTCAGGCAGA 1560
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TAAATGAGGGATTTTCTATAGGTTTCACGTCGGTGTTGATTATTGTGGGCTCAATCATCG 1620
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 AGCTGAGAAGGTCTTATCAAGCATACAATGTGATGCCAGCACTAAGCAAAGTTCTAAGGA 1680
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 GATATGGTGCCTGAGGTTATGTACGCCACATATTTGGTTATGATGGTATCATCCACAAGA 1740
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 AGAAGAGGGCCATTTCAAAAAAACTTCAGAGTTTACAGGCTTACAGCCGACTAGATGCTG 1800
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TGACCTTGATTATTGTCAACAACTTGCAGTACGGTGCAGTAAGAAGAGTTCTATAACCCA 1860
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 GACCAATATTGTGCTTGGGTTGGGATGAGATTAGTATAGTTTGATATCAATCTTCTGTGG 1920
consensus_4388#1 -----------------------------------ATAGTTTGATATCAATCTTCTGTGG 25
*************************
consensus_4388#0 CATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATG 1980
consensus_4388#1 CATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATG 85
************************************************************
consensus_4388#0 AAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGT 2040
consensus_4388#1 AAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGT 145
************************************************************
consensus_4388#0 TGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTT 2100
consensus_4388#1 TGACGGCTTGATGCAATGCGAACGAAAANTTGGATCCAATCTCACCCAGNTGTATAATTT 205
**************************** ******************** **********
consensus_4388#0 TCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGT 2160
consensus_4388#1 TCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGT 265
************************************************************
consensus_4388#0 CAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGT---TTTGGGTTGATTG--TTGGAA 2215
consensus_4388#1 CAGAAGGCAGAACCTGAAGTCTGCAAAATTGGCTGNGTGTTGGGGNTGATTNGNTTGGAA 325
****** ************************ * ** *** ***** ******
consensus_4388#0 CGTTCTACATCAGAGGC-TGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAA 2274
consensus_4388#1 CGNTCTNCATCAGAGGNCTGGNCGGGTGCCNANNCCCA--AAANNGNNCNGNNNNANNGA 383
** *** ********* *** ** ** * * * * * * * *
consensus_4388#0 GATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAA 2334
consensus_4388#1 AACTTGGGGCCANNTG--GGGNNCCCNNT----TANNTNNGTGGNCTTCCNTTNCNTTNG 437
* * * * * * ** * * * ** * *** ** *
consensus_4388#0 ATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCT 2394
consensus_4388#1 G-----ACCCTGCCNNTANNAGANCCCGNGG----------------------------- 463
* * * *** *
consensus_4388#0 GTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGATAAAGAAGCACATTTTTCTTT 2454
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 TATTGACAAAAAAAAA 2470
consensus_4388#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||