These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2470 fasta sequence [TTGCAATCCCATCGGCCGGCAGAGCGCGACGGCGGCAGCTCGGCCACCGCCGCGGCATCGCCGCCATGCCGCACTCACTCTCCCTCCTGCTCGCGCCCAGCCGCGCGCTCTCCCTCTCCTCCCCACCGCTCCGCCTCGCCCCAACGCACCCACCACTTCGCCTGCACCACGACGGCGGCCACCTCCTCGTGGGCACGACGAGGCGGCAGGCTCCCTCGCCTCGCCGCCGCCGTCTCCATGCCGCCAGGGCTTCCGCGCCGTCCGCCGCCGCGGCGTCCCCCGTAGGGCCTGCGGGCGAGGGTGGCGAGGTGGGGGGCAGGGCGAGGAAGGCGGCGGGGTACCGGAACAGGTTCCTGGACCTGGCGCGGCTGGGGGCCGTGGCGGAGAGCGCGGCGGAGGCGCTCTTCCGCAGCGAGATTCGCCGGCGGCTGGCCGTCACGGCCGTGCTCATCCTGCTCAGCCGCGTCGGCTACTTCGTCCCGCTTCCCGGGTTCGACCGACGGCTCATCCCCGATTCCTACCTCAGCTTTGCACCCCTTCCTGCAGATGACCTCGGTGATTTTTCATCCGAATTGAAGCTGTCATTTTTCCAGCTCGGAATCAGTCATCAGATTTCAGCATCTATTGTCATGCAGGTTCTCTGTCATGTTCTTCCATCACTTGAAAAACTACGAAAGGAAGGGTTAGATGGACATGAGAAGATCAAAGGCTATATTTGGTGGCTGTCGCTGGGTTTTGCACTTGTGGCGGCTTTTACAGTGTCATGCTACTCACTGCAATATTCTATATATGCTGCAAGTTACAGAGTTAAGCATGTAATGATAACAAGCCTTTTCCTTGTTCTTGGTGCAATGACAATGACATGGATCTGTGACACTATATCGGAATCTGGATTTGGACATGGCTCTTCCTTGATTATCTGTGTGGGAATATTGACTGGTTATACAGACACACTCCACAAGATGTTAACTCAATTTTCAGGAAATTGGTACAGCTGTTGGCCCTACATCTTGGGGATAGCTGGGACTTTTATTTTGGTTACCATGGGAGCAGTACTGGTGACTGAAGGGTGTAGGAAGATAAAGCTTCAGTACTATGGATTTAAATTGGCTTCTGGTGCAAGGAGTGAGAGCTCCCCAGTTACAGAGGTAGAGCCATATATCCCTTTTAACATAAATCCAACTGGGATGCAGCCCTTGCTTACCACCTCATACTTATTAGCTTTTCCAAGCATTATGGCCAGCATTTTTGGTACGCAATTTTGGGAAAGTTTGAAGGAAACGTTGAATCCAAAGACTTCAGTTGGTGGTGGTCCATGAGTTTATTATTTGACATATGCATTTCTTGTCTTCGTCTTCAATATTTTTGACATTGCAAACTTGCCAAAAGAGATATCTGACTACCTGAATAAAATGAGTGCTAGAGTACCGAAGATAAAGCCTGGAAGAGCAACAGTAGAGTATCTTACAAAAATACAAACATCTACACGTTTCTGGGGGGGTATATTGCTGAGCTTGTTGGCGACTTCCTCTTTATTACTTGACCGATATCTCAGGCAGATAAATGAGGGATTTTCTATAGGTTTCACGTCGGTGTTGATTATTGTGGGCTCAATCATCGAGCTGAGAAGGTCTTATCAAGCATACAATGTGATGCCAGCACTAAGCAAAGTTCTAAGGAGATATGGTGCCTGAGGTTATGTACGCCACATATTTGGTTATGATGGTATCATCCACAAGAAGAAGAGGGCCATTTCAAAAAAACTTCAGAGTTTACAGGCTTACAGCCGACTAGATGCTGTGACCTTGATTATTGTCAACAACTTGCAGTACGGTGCAGTAAGAAGAGTTCTATAACCCAGACCAATATTGTGCTTGGGTTGGGATGAGATTAGTATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGATAAAGAAGCACATTTTTCTTTTATTGACAAAAAAAAA] [+] EMBL AK067298 [TTGCAATCCCATCGGCCGGCAGAGCGCGACGGCGGCAGCTCGGCCACCGCCGCGGCATCGCCGCCATGCCGCACTCACTCTCCCTCCTGCTCGCGCCCAGCCGCGCGCTCTCCCTCTCCTCCCCACCGCTCCGCCTCGCCCCAACGCACCCACCACTTCGCCTGCACCACGACGGCGGCCACCTCCTCGTGGGCACGACGAGGCGGCAGGCTCCCTCGCCTCGCCGCCGCCGTCTCCATGCCGCCAGGGCTTCCGCGCCGTCCGCCGCCGCGGCGTCCCCCGTAGGGCCTGCGGGCGAGGGTGGCGAGGTGGGGGGCAGGGCGAGGAAGGCGGCGGGGTACCGGAACAGGTTCCTGGACCTGGCGCGGCTGGGGGCCGTGGCGGAGAGCGCGGCGGAGGCGCTCTTCCGCAGCGAGATTCGCCGGCGGCTGGCCGTCACGGCCGTGCTCATCCTGCTCAGCCGCGTCGGCTACTTCGTCCCGCTTCCCGGGTTCGACCGACGGCTCATCCCCGATTCCTACCTCAGCTTTGCACCCCTTCCTGCAGATGACCTCGGTGATTTTTCATCCGAATTGAAGCTGTCATTTTTCCAGCTCGGAATCAGTCATCAGATTTCAGCATCTATTGTCATGCAGGTTCTCTGTCATGTTCTTCCATCACTTGAAAAACTACGAAAGGAAGGGTTAGATGGACATGAGAAGATCAAAGGCTATATTTGGTGGCTGTCGCTGGGTTTTGCACTTGTGGCGGCTTTTACAGTGTCATGCTACTCACTGCAATATTCTATATATGCTGCAAGTTACAGAGTTAAGCATGTAATGATAACAAGCCTTTTCCTTGTTCTTGGTGCAATGACAATGACATGGATCTGTGACACTATATCGGAATCTGGATTTGGACATGGCTCTTCCTTGATTATCTGTGTGGGAATATTGACTGGTTATACAGACACACTCCACAAGATGTTAACTCAATTTTCAGGAAATTGGTACAGCTGTTGGCCCTACATCTTGGGGATAGCTGGGACTTTTATTTTGGTTACCATGGGAGCAGTACTGGTGACTGAAGGGTGTAGGAAGATAAAGCTTCAGTACTATGGATTTAAATTGGCTTCTGGTGCAAGGAGTGAGAGCTCCCCAGTTACAGAGGTAGAGCCATATATCCCTTTTAACATAAATCCAACTGGGATGCAGCCCTTGCTTACCACCTCATACTTATTAGCTTTTCCAAGCATTATGGCCAGCATTTTTGGTACGCAATTTTGGGAAAGTTTGAAGGAAACGTTGAATCCAAAGACTTCAGTTGGTGGTGGTCCATGAGTTTATTATTTGACATATGCATTTCTTGTCTTCGTCTTCAATATTTTTGACATTGCAAACTTGCCAAAAGAGATATCTGACTACCTGAATAAAATGAGTGCTAGAGTACCGAAGATAAAGCCTGGAAGAGCAACAGTAGAGTATCTTACAAAAATACAAACATCTACACGTTTCTGGGGGGGTATATTGCTGAGCTTGTTGGCGACTTCCTCTTTATTACTTGACCGATATCTCAGGCAGATAAATGAGGGATTTTCTATAGGTTTCACGTCGGTGTTGATTATTGTGGGCTCAATCATCGAGCTGAGAAGGTCTTATCAAGCATACAATGTGATGCCAGCACTAAGCAAAGTTCTAAGGAGATATGGTGCCTGAGGTTATGTACGCCACATATTTGGTTATGATGGTATCATCCACAAGAAGAAGAGGGCCATTTCAAAAAAACTTCAGAGTTTACAGGCTTACAGCCGACTAGATGCTGTGACCTTGATTATTGTCAACAACTTGCAGTACGGTGCAGTAAGAAGAGTTCTATAACCCAGACCAATATTGTGCTTGGGTTGGGATGAGATTAGTATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGA ] [-] EMBL CF323601 [ ATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGTTTTGGGTTGATTGTTGGAACGTTCTACATCAGAGGCTGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAAGATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAAATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCTGTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGATAAAGAAGCACATTTTTCTTTTATTGACAAAAAAAAA] consensusID : consensus_4388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [ATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAANTTGGATCCAATCTCACCCAGNTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGGCAGAACCTGAAGTCTGCAAAATTGGCTGNGTGTTGGGGNTGATTNGNTTGGAACGNTCTNCATCAGAGGNCTGGNCGGGTGCCNANNCCCAAAANNGNNCNGNNNNANNGAAACTTGGGGCCANNTGGGGNNCCCNNTTANNTNNGTGGNCTTCCNTTNCNTTNGGACCCTGCCNNTANNAGANCCCGNGG] [+] EMBL OSC18771 [ATAGTTTGATATCAATCTTCTGTGGCATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATGAAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGTTGACGGCTTGATGCAATGCGAACGAAAANTTGGATCCAATCTCACCCAGNTGTATAATTTTCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGTCAGAAGGCAGAACCTGAAGTCTGCAAAATTGGCTGNGTGTTGGGGNTGATTNGNTTGGAACGNTCTNCATCAGAGGNCTGGNCGGGTGCCNANNCCCAAAANNGNNCNGNNNNANNGAAACTTGGGGCCANNTGGGGNNCCCNNTTANNTNNGTGGNCTTCCNTTNCNTTNGGACCCTGCCNNTANNAGANCCCGNGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4388#0 TTGCAATCCCATCGGCCGGCAGAGCGCGACGGCGGCAGCTCGGCCACCGCCGCGGCATCG 60 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CCGCCATGCCGCACTCACTCTCCCTCCTGCTCGCGCCCAGCCGCGCGCTCTCCCTCTCCT 120 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CCCCACCGCTCCGCCTCGCCCCAACGCACCCACCACTTCGCCTGCACCACGACGGCGGCC 180 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 ACCTCCTCGTGGGCACGACGAGGCGGCAGGCTCCCTCGCCTCGCCGCCGCCGTCTCCATG 240 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CCGCCAGGGCTTCCGCGCCGTCCGCCGCCGCGGCGTCCCCCGTAGGGCCTGCGGGCGAGG 300 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 GTGGCGAGGTGGGGGGCAGGGCGAGGAAGGCGGCGGGGTACCGGAACAGGTTCCTGGACC 360 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TGGCGCGGCTGGGGGCCGTGGCGGAGAGCGCGGCGGAGGCGCTCTTCCGCAGCGAGATTC 420 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 GCCGGCGGCTGGCCGTCACGGCCGTGCTCATCCTGCTCAGCCGCGTCGGCTACTTCGTCC 480 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CGCTTCCCGGGTTCGACCGACGGCTCATCCCCGATTCCTACCTCAGCTTTGCACCCCTTC 540 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CTGCAGATGACCTCGGTGATTTTTCATCCGAATTGAAGCTGTCATTTTTCCAGCTCGGAA 600 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TCAGTCATCAGATTTCAGCATCTATTGTCATGCAGGTTCTCTGTCATGTTCTTCCATCAC 660 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TTGAAAAACTACGAAAGGAAGGGTTAGATGGACATGAGAAGATCAAAGGCTATATTTGGT 720 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 GGCTGTCGCTGGGTTTTGCACTTGTGGCGGCTTTTACAGTGTCATGCTACTCACTGCAAT 780 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 ATTCTATATATGCTGCAAGTTACAGAGTTAAGCATGTAATGATAACAAGCCTTTTCCTTG 840 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TTCTTGGTGCAATGACAATGACATGGATCTGTGACACTATATCGGAATCTGGATTTGGAC 900 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 ATGGCTCTTCCTTGATTATCTGTGTGGGAATATTGACTGGTTATACAGACACACTCCACA 960 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 AGATGTTAACTCAATTTTCAGGAAATTGGTACAGCTGTTGGCCCTACATCTTGGGGATAG 1020 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CTGGGACTTTTATTTTGGTTACCATGGGAGCAGTACTGGTGACTGAAGGGTGTAGGAAGA 1080 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TAAAGCTTCAGTACTATGGATTTAAATTGGCTTCTGGTGCAAGGAGTGAGAGCTCCCCAG 1140 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TTACAGAGGTAGAGCCATATATCCCTTTTAACATAAATCCAACTGGGATGCAGCCCTTGC 1200 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TTACCACCTCATACTTATTAGCTTTTCCAAGCATTATGGCCAGCATTTTTGGTACGCAAT 1260 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TTTGGGAAAGTTTGAAGGAAACGTTGAATCCAAAGACTTCAGTTGGTGGTGGTCCATGAG 1320 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TTTATTATTTGACATATGCATTTCTTGTCTTCGTCTTCAATATTTTTGACATTGCAAACT 1380 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TGCCAAAAGAGATATCTGACTACCTGAATAAAATGAGTGCTAGAGTACCGAAGATAAAGC 1440 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 CTGGAAGAGCAACAGTAGAGTATCTTACAAAAATACAAACATCTACACGTTTCTGGGGGG 1500 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 GTATATTGCTGAGCTTGTTGGCGACTTCCTCTTTATTACTTGACCGATATCTCAGGCAGA 1560 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TAAATGAGGGATTTTCTATAGGTTTCACGTCGGTGTTGATTATTGTGGGCTCAATCATCG 1620 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 AGCTGAGAAGGTCTTATCAAGCATACAATGTGATGCCAGCACTAAGCAAAGTTCTAAGGA 1680 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 GATATGGTGCCTGAGGTTATGTACGCCACATATTTGGTTATGATGGTATCATCCACAAGA 1740 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 AGAAGAGGGCCATTTCAAAAAAACTTCAGAGTTTACAGGCTTACAGCCGACTAGATGCTG 1800 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TGACCTTGATTATTGTCAACAACTTGCAGTACGGTGCAGTAAGAAGAGTTCTATAACCCA 1860 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 GACCAATATTGTGCTTGGGTTGGGATGAGATTAGTATAGTTTGATATCAATCTTCTGTGG 1920 consensus_4388#1 -----------------------------------ATAGTTTGATATCAATCTTCTGTGG 25 ************************* consensus_4388#0 CATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATG 1980 consensus_4388#1 CATAAACTGGAACTGAAGAACCAAGGAGGATATTTTGTTACTCATGGCACAGCAACTATG 85 ************************************************************ consensus_4388#0 AAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGT 2040 consensus_4388#1 AAGAGCGTGACCTACGAGGAGCTGTGTAATTGTGTTGTCTTTGGCCACTTCTGGAATGGT 145 ************************************************************ consensus_4388#0 TGACGGCTTGATGCAATGCGAACGAAAATTTGGATCCAATCTCACCCAGCTGTATAATTT 2100 consensus_4388#1 TGACGGCTTGATGCAATGCGAACGAAAANTTGGATCCAATCTCACCCAGNTGTATAATTT 205 **************************** ******************** ********** consensus_4388#0 TCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGT 2160 consensus_4388#1 TCTGAAGATCAGATTGCCAAATTGCTGGCTAGCTGCATCACGCTTAGTAAATGGTGCGGT 265 ************************************************************ consensus_4388#0 CAGAAGTCAGAACCTGAAGTCTGCAAAATTGCTGGT---TTTGGGTTGATTG--TTGGAA 2215 consensus_4388#1 CAGAAGGCAGAACCTGAAGTCTGCAAAATTGGCTGNGTGTTGGGGNTGATTNGNTTGGAA 325 ****** ************************ * ** *** ***** ****** consensus_4388#0 CGTTCTACATCAGAGGC-TGGCGGGTTGACCATCTGGACTTATCCGTGTAGCACAATGAA 2274 consensus_4388#1 CGNTCTNCATCAGAGGNCTGGNCGGGTGCCNANNCCCA--AAANNGNNCNGNNNNANNGA 383 ** *** ********* *** ** ** * * * * * * * * consensus_4388#0 GATCAGCTGTCGTGCGTTTGCTGACCAGTAGTATCTCTCTGTAGGCTTATGTTTTTGTAA 2334 consensus_4388#1 AACTTGGGGCCANNTG--GGGNNCCCNNT----TANNTNNGTGGNCTTCCNTTNCNTTNG 437 * * * * * * ** * * * ** * *** ** * consensus_4388#0 ATATATGGCTTATTAACAGTAGAACTTCCACTCCTGTCCTGACTTCTCAAAGGCTGTTCT 2394 consensus_4388#1 G-----ACCCTGCCNNTANNAGANCCCGNGG----------------------------- 463 * * * *** * consensus_4388#0 GTTCACTTTTCCAAAAAGCAGCTTCATATTTACAAAAGATAAAGAAGCACATTTTTCTTT 2454 consensus_4388#1 ------------------------------------------------------------ consensus_4388#0 TATTGACAAAAAAAAA 2470 consensus_4388#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||