These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence [TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGCCATTAAAATTACTTCTTGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGCAAAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTGATTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATTCCCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTTACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAGTAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGGCCGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATAATTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTGCGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTTCTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCATAAACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC] [+] EMBL AK059934 [TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGCCATTAAAATTACTTCTTGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGCAAAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTGATTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATTCCCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTTACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAGTAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGGCCGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATAATTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTGCGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTTCTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCATAAACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC] consensusID : consensus_439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [TGGATCGTTTGACCACTACACACATGGAAGAGGCGGAATTTGTTGAGCACGTTCACGTGGAGTCCGACACCCTGCTGCAAAGACTAGAGGCGAGACCTCCAGTCGTCAGGTCTGACGACGTAGCGAGTGTCCTTCGCAACTTCCGTGCACGTGCTGCCGCACTACTACGTCGTGTCTCCTGTCGGAGCGCGGCAGATGTGGTGCAGACGTCAGGCCGACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCACACATA] [+] EMBL BP184434 [TGGATCGTTTGACCACTACACACATGGAAGAGGCGGAATTTGTTGAGCACGTTCACGTGGAGTCCGACACCCTGCTGCAAAGACTAGAGGCGAGACCTCCAGTCGTCAGGTCTGACGACGTAGCGAGTGTCCTTCGCAACTTCCGTGCACGTGCTGCCGCACTACTACGTCGTGTCTCCTGTCGGAGCGCGGCAGATGTGGTGCAGACGTCAGGCCGACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCACACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_439#0 TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGC-CATTAAAATTACTTC 59 consensus_439#1 -----------------------TGGATCGTTTGACCACTACACACATGGAAGAGGCGGA 37 * *** *** * * * *** ** * consensus_439#0 TTGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGC 119 consensus_439#1 ATTTGTTGAGCACGTTCACGTGGAGTCC-----GACACCCT--GCTGCAAAGACTAGAG- 89 * * * * * ****** * * * * * * ****** ** * consensus_439#0 AAAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTG 179 consensus_439#1 GCGAGACCTCCAGTCG-TCAGGTCTGACGACGTAGCGAGTGTCCTTCGCAACTTC-CGTG 147 * * ** * * * * * * * * * ** * * *** * ** consensus_439#0 ATTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATT 239 consensus_439#1 CACGTGCTG-CCGCACTACTACGTCGTGTCTC---------CTGTCGGAGCGCGGCAGAT 197 ** *** ** * * *** * * * consensus_439#0 CCCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCG 299 consensus_439#1 GTGGTGCAGACGTCAGGCCG-----ACGGCCATCACCACCACTACCCCGACGTTCCAGCG 252 * * * ** ** ** *********************************** consensus_439#0 TGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACG 359 consensus_439#1 TGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACG 312 ************************************************************ consensus_439#0 GTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAG 419 consensus_439#1 GTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAG 372 ************************************************************ consensus_439#0 GGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATG 479 consensus_439#1 GGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATG 432 ************************************************************ consensus_439#0 TTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACA 539 consensus_439#1 TTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACA 492 ******************* **************************************** consensus_439#0 ACGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCC 599 consensus_439#1 ACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCC 552 ****************** ***************************************** consensus_439#0 ACACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTT 659 consensus_439#1 ACACACAGCACACATA-------------------------------------------- 568 ********** ***** consensus_439#0 ACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAG 719 consensus_439#1 ------------------------------------------------------------ consensus_439#0 TAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGG 779 consensus_439#1 ------------------------------------------------------------ consensus_439#0 CCGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATA 839 consensus_439#1 ------------------------------------------------------------ consensus_439#0 ATTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTG 899 consensus_439#1 ------------------------------------------------------------ consensus_439#0 CGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTT 959 consensus_439#1 ------------------------------------------------------------ consensus_439#0 CTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCAT 1019 consensus_439#1 ------------------------------------------------------------ consensus_439#0 AAACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC 1065 consensus_439#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||