cluster # 4392

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Oryza sativa
cluster # 4392 cluster # 4392 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4392#0 length = 1363 sequences # 1

consensus_4392#1 length = 708 sequences # 2

consensusID : consensus_4392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1363
fasta sequence

                              [GAGGAGAAGAAACTTACGAGGACTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGGGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAATTGGAGTTCTTGAAGTTAATTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATAGGATGGCGAGATACTGAGAGTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTATGATAACTTCAGAATTCAGATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACTTGAAATCAAGTCTTGATGATTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGTGACCCATTTTTTTTTTTCATGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGAATCCCTTTTTCTCTGAGAAAGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAATTGTTCGGAGTCTTGATGATGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAATTATTCGTGACTGATTGCATTTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAAGTTGGCTTGCCACATTTGTTCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACTAGCAGGAGTATGTGCATGCCCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAATTCGGCTTCTGAATTCTAGGTTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGCTGCACTAATTGCCTGATTAGAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAGCTCTCCAAACAGGCACAAAAGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCAGTTTATTTTTGGCTTCTACTTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATTTC]

[+] EMBL AK064081             [GAGGAGAAGAAACTTACGAGGACTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGGGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAATTGGAGTTCTTGAAGTTAATTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATAGGATGGCGAGATACTGAGAGTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTATGATAACTTCAGAATTCAGATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACTTGAAATCAAGTCTTGATGATTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGTGACCCATTTTTTTTTTTCATGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGAATCCCTTTTTCTCTGAGAAAGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAATTGTTCGGAGTCTTGATGATGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAATTATTCGTGACTGATTGCATTTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAAGTTGGCTTGCCACATTTGTTCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACTAGCAGGAGTATGTGCATGCCCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAATTCGGCTTCTGAATTCTAGGTTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGCTGCACTAATTGCCTGATTAGAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAGCTCTCCAAACAGGCACAAAAGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCAGTTTATTTTTGGCTTCTACTTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATTTC]




>consensus_4392#0
GAGGAGAAGAAACTTACGAGGACTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCC
GATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCGACGCCGCCCGAGCTCCCG
AGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGGG
GTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACC
TCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGAC
GGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCC
AAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCT
TCTTCTCTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCT
GACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAATTGGAGTTCTTGAAGTTAA
TTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATAGGATGGCGAGATACTGAGA
GTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTATGATAACTTCAGAATTCAG
ATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACTTGAAATCAAGTCTTGATGA
TTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGTGACCCATTTTTTTTTTTCA
TGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGAATCCCTTTTTCTCTGAGAA
AGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAATTGTTCGGAGTCTTGATGA
TGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAATTATTCGTGACTGATTGCAT
TTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAAGTTGGCTTGCCACATTTGT
TCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACTAGCAGGAGTATGTGCATGC
CCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAATTCGGCTTCTGAATTCTAGG
TTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGCTGCACTAATTGCCTGATTA
GAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAGCTCTCCAAACAGGCACAAA
AGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCAGTTTATTTTTGGCTTCTAC
TTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATTTC

consensusID : consensus_4392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 708
fasta sequence

                              [CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCCGCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTCTCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCGCCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGC-CGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT]

[+] EMBL AK105369             [CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCCGCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTCTCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCGCCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGC CGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT]
[+] EMBL AU033313             [                                                                                                                                                                                                                           CCTCCTCCTCCGCCCGAGCAAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGG GCNCGACGCCGACGCCGCCCGAGCTCCCGAGCGTNTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCNACTCGGACAGCTACAGCGGCA NAACGACGACGT GACGACTACCGCNACGGCGACG                                                                                                                                                                                                           ]




>consensus_4392#1
CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCC
GCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTC
TCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCG
CCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGA
GCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCG
ACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCG
AAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAG
ATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGAC
GTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTC
ATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGAC
AATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGG
GTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4392#0      ------------------------------------------------------------
consensus_4392#1      CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCC 60
                                                                                  

consensus_4392#0      ------------------------------------------------------------
consensus_4392#1      GCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTC 120
                                                                                  

consensus_4392#0      ------------------------------------------------------------
consensus_4392#1      TCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCG 180
                                                                                  

consensus_4392#0      ------------GAGGAGAAGAAACTTACGAGGACTCCTCCTCC------GCCCGAGCGA 42
consensus_4392#1      CCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGA 240
                                  * ****   *  * * *     **********      **********

consensus_4392#0      GCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCG 102
consensus_4392#1      GCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCG 300
                      ************************************************************

consensus_4392#0      ACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCG 162
consensus_4392#1      ACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCG 360
                      ************************************************************

consensus_4392#0      AAAGGGCGCGCGCTGGGGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAG 222
consensus_4392#1      AAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAG 420
                      **************** *******************************************

consensus_4392#0      ATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGAC 282
consensus_4392#1      ATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGAC 480
                      ************************************************************

consensus_4392#0      GTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTC 342
consensus_4392#1      GTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTC 540
                      ************************************************************

consensus_4392#0      ATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGAC 402
consensus_4392#1      ATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGAC 600
                      ************************************************************

consensus_4392#0      AATCTTATTATCAGGTCTTCTTCTCTTTTTTTTT-CCTTGGGGATTTCTTGGTCCTTTGG 461
consensus_4392#1      AATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGG 660
                      ********************************** *************************

consensus_4392#0      GTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAA 521
consensus_4392#1      GTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT------------ 708
                      ************************************************            

consensus_4392#0      TTGGAGTTCTTGAAGTTAATTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATA 581
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      GGATGGCGAGATACTGAGAGTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTA 641
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TGATAACTTCAGAATTCAGATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACT 701
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TGAAATCAAGTCTTGATGATTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGT 761
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      GACCCATTTTTTTTTTTCATGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGA 821
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      ATCCCTTTTTCTCTGAGAAAGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAA 881
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TTGTTCGGAGTCTTGATGATGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAAT 941
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TATTCGTGACTGATTGCATTTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAA 1001
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      GTTGGCTTGCCACATTTGTTCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACT 1061
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      AGCAGGAGTATGTGCATGCCCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAAT 1121
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TCGGCTTCTGAATTCTAGGTTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGC 1181
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TGCACTAATTGCCTGATTAGAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAG 1241
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      CTCTCCAAACAGGCACAAAAGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCA 1301
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      GTTTATTTTTGGCTTCTACTTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATT 1361
consensus_4392#1      ------------------------------------------------------------
                                                                                  

consensus_4392#0      TC 1363
consensus_4392#1      --