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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1755 fasta sequence
[TGTAGCTACGCCTTCATGGCCGAGCAAGGCTGGTACAGTTTCAGCCGGCAAGATTTCAGTCATGCCGGCAGCAAGAGCTTTGTCGAGAGTGATGGAGGAAGAAGTGTCCCAACAGTGCTTGACTGGGCCATCAGGAGAAATGGATTGTGCTCATCAGCAACAGGGGCTCCTGCCTGTGTCAGCGCCCACAGCTACTGTGTAAACGCTACCAACGGCGAGGGGTACCTCTGCAACTGTTCCGCAGGGTACTCCGGCAGTCCGTATGTCACCGGCGGATGCATAAATATTAATGAGTGCGAGCTTTGGAGAGAAGGGCCTGCCATGTATCCCTGTTACAGTGGTAGCAGATGCTATGACACAGAGGGTGGTTACAAGTGCAAATGCCGATTTCCCCATAGAGGAGACGGTACTGGCAAGGGATGCAAGCCCATAATTCCCTTACGTATAGTCGCCACACTAGCAACGGTATGCGCCATGGTTGCTCTTTTGGGCCTTGCGTGGTTCATTCGTTGTGAGCACAAGGCATGGGAGCAGAGGGGGTTCTTCGAAAGTAACGGTGGCCAACTACTGAAGGATATGGGCGTTACCACCTTCACGCAGGAGCAGCTTGACACGATAACAAACAAGAAGAGAACCAAGATCGGGAAGGGCACCTTCGGTGAGGTCTATAAGGGACTCCACGATGACCAGGAGGTCGCCGTCAAATACTCCACCGCGAAGAGCAGTATTAGACGAGGCAAATACGAGTTCGTGAAAGAGATGGCCTTTAGAAAATCCATCAGTTCCAATGGTGATGGTACGCTCGGGCAAAAAGCGTCCGTGAATGAGATCATTGTCCAGTCACAGATGCAGCACGACAACGTGGTCCGTCTCATCGGGTGCTGCATGGAGACGGAGGTCCCCATGCTGGTCTTCGAGTTTATCCCCAATGGGAGCCTCGAGACCGTGCTTCATGGACCTGACCTACGGGCTCTCTCGCTGCCAGAACGCCTCGGCATTGCCATCGGCTCCGCGGCTGCTCTTGCCTACATGCATTCTCTTGGTCTCCAAAGCATTATTCATGGAGATGTCAAGCCAGCCAACATCCTTCTTGGTAAGGATCTCGTGCCTAAGGTCTCTGACTTTGGGTCCTCCAAGTTAGGCCTTGCAACCAAGGAAGTATGTGCCGACAAGAACTACATCGATCCTGTGTGCATGAAAACTAACATTGTCACACAGAAAAGCGATGTTTACAGCTTTGGGATCGTCCTCATAGAACTCATTACTCGGAAAAAGGCCAAGTATGACGGGAGAAACGTTCAGTCAGATTTTGTCAACTGTCACACGGACAACAATGCAAGGAGGGAGATGTATGACCAGGACATGCTGCATACTGATGCCCACAGCCTTCAGCCTGATCAGTGCATTGAATGCCTCGACACGATGGCGGCCATCGCAGTCCGGTGTCTCAAAGATGACGTGGATGAGAGGCCCACCATGGCAGAGGTGCTGGAGGAGCTTAAGCAGTTGAGAGCAAGCAACGAACTGATGGTGTAGAAGATGAACCAAGCCTGGTCTCCTCAGACTCGGTTGGTAGTCCATCGATATATGGATTCGTCCTTCTTGCTATTGTTTTCTCCGTCGATCTCGCAGATGTGACGTTTGTTGCTTCCGCCGGGTTGTCCTGTTATGCTTGTAGAGCTGCAGCATTGTGCTATTGTCGTTTAGTTTCCTCTTGTAACAAGTATCGATAACGATTCTTTTAGTTTCTGGTAA]
[+] EMBL AF353091 [TGTAGCTACGCCTTCATGGCCGAGCAAGGCTGGTACAGTTTCAGCCGGCAAGATTTCAGTCATGCCGGCAGCAAGAGCTTTGTCGAGAGTGATGGAGGAAGAAGTGTCCCAACAGTGCTTGACTGGGCCATCAGGAGAAATGGATTGTGCTCATCAGCAACAGGGGCTCCTGCCTGTGTCAGCGCCCACAGCTACTGTGTAAACGCTACCAACGGCGAGGGGTACCTCTGCAACTGTTCCGCAGGGTACTCCGGCAGTCCGTATGTCACCGGCGGATGCATAAATATTAATGAGTGCGAGCTTTGGAGAGAAGGGCCTGCCATGTATCCCTGTTACAGTGGTAGCAGATGCTATGACACAGAGGGTGGTTACAAGTGCAAATGCCGATTTCCCCATAGAGGAGACGGTACTGGCAAGGGATGCAAGCCCATAATTCCCTTACGTATAGTCGCCACACTAGCAACGGTATGCGCCATGGTTGCTCTTTTGGGCCTTGCGTGGTTCATTCGTTGTGAGCACAAGGCATGGGAGCAGAGGGGGTTCTTCGAAAGTAACGGTGGCCAACTACTGAAGGATATGGGCGTTACCACCTTCACGCAGGAGCAGCTTGACACGATAACAAACAAGAAGAGAACCAAGATCGGGAAGGGCACCTTCGGTGAGGTCTATAAGGGACTCCACGATGACCAGGAGGTCGCCGTCAAATACTCCACCGCGAAGAGCAGTATTAGACGAGGCAAATACGAGTTCGTGAAAGAGATGGCCTTTAGAAAATCCATCAGTTCCAATGGTGATGGTACGCTCGGGCAAAAAGCGTCCGTGAATGAGATCATTGTCCAGTCACAGATGCAGCACGACAACGTGGTCCGTCTCATCGGGTGCTGCATGGAGACGGAGGTCCCCATGCTGGTCTTCGAGTTTATCCCCAATGGGAGCCTCGAGACCGTGCTTCATGGACCTGACCTACGGGCTCTCTCGCTGCCAGAACGCCTCGGCATTGCCATCGGCTCCGCGGCTGCTCTTGCCTACATGCATTCTCTTGGTCTCCAAAGCATTATTCATGGAGATGTCAAGCCAGCCAACATCCTTCTTGGTAAGGATCTCGTGCCTAAGGTCTCTGACTTTGGGTCCTCCAAGTTAGGCCTTGCAACCAAGGAAGTATGTGCCGACAAGAACTACATCGATCCTGTGTGCATGAAAACTAACATTGTCACACAGAAAAGCGATGTTTACAGCTTTGGGATCGTCCTCATAGAACTCATTACTCGGAAAAAGGCCAAGTATGACGGGAGAAACGTTCAGTCAGATTTTGTCAACTGTCACACGGACAACAATGCAAGGAGGGAGATGTATGACCAGGACATGCTGCATACTGATGCCCACAGCCTTCAGCCTGATCAGTGCATTGAATGCCTCGACACGATGGCGGCCATCGCAGTCCGGTGTCTCAAAGATGACGTGGATGAGAGGCCCACCATGGCAGAGGTGCTGGAGGAGCTTAAGCAGTTGAGAGCAAGCAACGAACTGATGGTGTAGAAGATGAACCAAGCCTGGTCTCCTCAGACTCGGTTGGTAGTCCATCGATATATGGATTCGTCCTTCTTGCTATTGTTTTCTCCGTCGATCTCGCAGATGTGACGTTTGTTGCTTCCGCCGGGTTGTCCTGTTATGCTTGTAGAGCTGCAGCATTGTGCTATTGTCGTTTAGTTTCCTCTTGTAACAAGTATCGATAACGATTCTTTTAGTTTCTGGTAA]
consensusID : consensus_4413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[CTCGACATCGCCATCGGCTCTGCGGAGGCTCTTGCATATATGCACTCTTTTGATTCCCAAAGCATCATCCACGGAGATGTCAAGCCAGCCAACATCCTTCTTGGTAACAACCTGGTGCCTAAGGTCTCAGACTTTGGGTCCTCCAAGTTGGGCCTTGTAACCAAGGCACCATGTGCCGACTGGAACTACATCGACCCTGTGTGCATGAAAACGAACATCGTCATACAAAAAAGCGATGTGTACAGCTTTGGGGTTGTACTCACAGAACTCATTACTCGGAAAAGGGCCAAGTATGATGGGAGAAGCGTTCATCCAGATTTTGTCAAGTATTACACGGATAACAATTCAAGGAGGGAGATGTATGACCAGGACATGCTGCATAGTGATGCCCACAGCCTTCAGCCTGATCAGTGCATTGAATGCCTCGACACGATGGCGGGCATCGCAGTCCGGTGTCTCAAAGATGACGTGGATGAGAGGCCCACCATGGCAGAGGTGCTGGAGGAGCTTAAGCAGTTGAGAGCAAGCAACGAACTGATCGTGTAGACAGATGAACCAAGCCTGGTCTCTTCAGAATCGGTTGGTAGTCCATCGATATATGGATTCATGCCTCTCGCTATTGATTTCTCCGTCGATCTCGCAGATGTGACGTTTGTTGCTTCCACCGGGTTGTCCTGTTATGCTTGTAGAGCAGCATATATTGTGCTATTGTACGTCGTTTAGTTTCCTCTTGTAACAAGTATCGATAACGATATTGTAGTTCTGGTATATCACGAATAAATCGTGGCATAACTTAATTTATCAAGGAGATGTATTTTTG]
[-] EMBL CB618952 [CTCGACATCGCCATCGGCTCTGCGGAGGCTCTTGCATATATGCACTCTTTTGATTCCCAAAGCATCATCCACGGAGATGTCAAGCCAGCCAACATCCTTCTTGGTAACAACCTGGTGCCTAAGGTCTCAGACTTTGGGTCCTCCAAGTTGGGCCTTGTAACCAAGGCACCATGTGCCGACTGGAACTACATCGACCCTGTGTGCATGAAAACGAACATCGTCATACAAAAAAGCGATGTGTACAGCTTTGGGGTTGTACTCACAGAACTCATTACTCGGAAAAGGGCCAAGTATGATGGGAGAAGCGTTCATCCAGATTTTGTCAAGTATTACACGGATAACAATTCAAGGAGGGAGATGTATGACCAGGACATGCTGCATAGTGATGCCCACAGCCTTCAGCCTGATCAGTGCATTGAATGCCTCGACACGATGGCGGGCATCGCAGTCCGGTGTCTCAAAGATGACGTGGATGAGAGGCCCACCATGGCAGAGGTGCTGGAGGAGCTTAAGCAGTTGAGAGCAAGCAACGAACTGATCGTGTAGACAGATGAACCAAGCCTGGTCTCTTCAGAATCGGTTGGTAGTCCATCGATATATGGATTCATGCCTCTCGCTATTGATTTCTCCGTCGATCTCGCAGATGTGACGTTTGTTGCTTCCACCGGGTTGTCCTGTTATGCTTGTAGAGCAGCATATATTGTGCTATTGTACGTCGTTTAGTTTCCTCTTGTAACAAGTATCGATAACGATATTGTAGTTCTGGTATATCACGAATAAATCGTGGCATAACTTAATTTATCAAGGAGATGTATTTTTG]
consensusID : consensus_4413#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[ATGCNGGTCTACGAGTTCATCCCCAATGGGAGCCTCGAGACCGTGCTTCATGGACCTGACCTGCGGGCTCTCTCGCTGCCAGAACGCCTCGACATTGCCATCGGCTCCGCGGCTGCTCTTGCCTACATGCATTCTCTTGGTCTCCAAAGCATTATTCATGGAGATGTCAAGCCAGCCAACATCCTTCTTGGTAAGGATCTCGTGCCTAAGGTCTCTGACTTTGGGTCCTCCAAGTTAGGCCTTGCAACCAAGGAAGTATGTGCCGACAAGAACTACATCGATCCTGTGTGCATGAAAACTAACATTGTCACACAGAAAAGCGATGTTTACAGCTTTGGGATCGTCCTCATAGAACTCATTACTCGGAAAAAGGCCAAGTATGACGGGAGAAACGTNCAGTCAGATTTTGTCAACTGTCACACGGACAACAATGCAAGGAGGGAGATGTATGACCAAAAAAAAAAAAAAA]
[+] EMBL CA753604 [ATGCNGGTCTACGAGTTCATCCCCAATGGGAGCCTCGAGACCGTGCTTCATGGACCTGACCTGCGGGCTCTCTCGCTGCCAGAACGCCTCGACATTGCCATCGGCTCCGCGGCTGCTCTTGCCTACATGCATTCTCTTGGTCTCCAAAGCATTATTCATGGAGATGTCAAGCCAGCCAACATCCTTCTTGGTAAGGATCTCGTGCCTAAGGTCTCTGACTTTGGGTCCTCCAAGTTAGGCCTTGCAACCAAGGAAGTATGTGCCGACAAGAACTACATCGATCCTGTGTGCATGAAAACTAACATTGTCACACAGAAAAGCGATGTTTACAGCTTTGGGATCGTCCTCATAGAACTCATTACTCGGAAAAAGGCCAAGTATGACGGGAGAAACGTNCAGTCAGATTTTGTCAACTGTCACACGGACAACAATGCAAGGAGGGAGATGTATGACCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4413#0 TGTAGCTACGCCTTCATGGCCGAGCAAGGCTGGTACAGTTTCAGCCGGCAAGATTTCAGT 60
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 CATGCCGGCAGCAAGAGCTTTGTCGAGAGTGATGGAGGAAGAAGTGTCCCAACAGTGCTT 120
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GACTGGGCCATCAGGAGAAATGGATTGTGCTCATCAGCAACAGGGGCTCCTGCCTGTGTC 180
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 AGCGCCCACAGCTACTGTGTAAACGCTACCAACGGCGAGGGGTACCTCTGCAACTGTTCC 240
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GCAGGGTACTCCGGCAGTCCGTATGTCACCGGCGGATGCATAAATATTAATGAGTGCGAG 300
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 CTTTGGAGAGAAGGGCCTGCCATGTATCCCTGTTACAGTGGTAGCAGATGCTATGACACA 360
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GAGGGTGGTTACAAGTGCAAATGCCGATTTCCCCATAGAGGAGACGGTACTGGCAAGGGA 420
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 TGCAAGCCCATAATTCCCTTACGTATAGTCGCCACACTAGCAACGGTATGCGCCATGGTT 480
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GCTCTTTTGGGCCTTGCGTGGTTCATTCGTTGTGAGCACAAGGCATGGGAGCAGAGGGGG 540
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 TTCTTCGAAAGTAACGGTGGCCAACTACTGAAGGATATGGGCGTTACCACCTTCACGCAG 600
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GAGCAGCTTGACACGATAACAAACAAGAAGAGAACCAAGATCGGGAAGGGCACCTTCGGT 660
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GAGGTCTATAAGGGACTCCACGATGACCAGGAGGTCGCCGTCAAATACTCCACCGCGAAG 720
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 AGCAGTATTAGACGAGGCAAATACGAGTTCGTGAAAGAGATGGCCTTTAGAAAATCCATC 780
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 AGTTCCAATGGTGATGGTACGCTCGGGCAAAAAGCGTCCGTGAATGAGATCATTGTCCAG 840
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 TCACAGATGCAGCACGACAACGTGGTCCGTCTCATCGGGTGCTGCATGGAGACGGAGGTC 900
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 CCCATGCTGGTCTTCGAGTTTATCCCCAATGGGAGCCTCGAGACCGTGCTTCATGGACCT 960
consensus_4413#2 ---ATGCNGGTCTACGAGTTCATCCCCAATGGGAGCCTCGAGACCGTGCTTCATGGACCT 57
consensus_4413#1 ------------------------------------------------------------
consensus_4413#0 GACCTACGGGCTCTCTCGCTGCCAGAACGCCTCGGCATTGCCATCGGCTCCGCGGCTGCT 1020
consensus_4413#2 GACCTGCGGGCTCTCTCGCTGCCAGAACGCCTCGACATTGCCATCGGCTCCGCGGCTGCT 117
consensus_4413#1 ------------------------------CTCGACATCGCCATCGGCTCTGCGGAGGCT 30
**** *** *********** **** ***
consensus_4413#0 CTTGCCTACATGCATTCTCTTGGTCTCCAAAGCATTATTCATGGAGATGTCAAGCCAGCC 1080
consensus_4413#2 CTTGCCTACATGCATTCTCTTGGTCTCCAAAGCATTATTCATGGAGATGTCAAGCCAGCC 177
consensus_4413#1 CTTGCATATATGCACTCTTTTGATTCCCAAAGCATCATCCACGGAGATGTCAAGCCAGCC 90
***** ** ***** *** *** * ********* ** ** ******************
consensus_4413#0 AACATCCTTCTTGGTAAGGATCTCGTGCCTAAGGTCTCTGACTTTGGGTCCTCCAAGTTA 1140
consensus_4413#2 AACATCCTTCTTGGTAAGGATCTCGTGCCTAAGGTCTCTGACTTTGGGTCCTCCAAGTTA 237
consensus_4413#1 AACATCCTTCTTGGTAACAACCTGGTGCCTAAGGTCTCAGACTTTGGGTCCTCCAAGTTG 150
***************** * ** ************** ********************
consensus_4413#0 GGCCTTGCAACCAAGGAAGTATGTGCCGACAAGAACTACATCGATCCTGTGTGCATGAAA 1200
consensus_4413#2 GGCCTTGCAACCAAGGAAGTATGTGCCGACAAGAACTACATCGATCCTGTGTGCATGAAA 297
consensus_4413#1 GGCCTTGTAACCAAGGCACCATGTGCCGACTGGAACTACATCGACCCTGTGTGCATGAAA 210
******* ******** * ********** ************ ***************
consensus_4413#0 ACTAACATTGTCACACAGAAAAGCGATGTTTACAGCTTTGGGATCGTCCTCATAGAACTC 1260
consensus_4413#2 ACTAACATTGTCACACAGAAAAGCGATGTTTACAGCTTTGGGATCGTCCTCATAGAACTC 357
consensus_4413#1 ACGAACATCGTCATACAAAAAAGCGATGTGTACAGCTTTGGGGTTGTACTCACAGAACTC 270
** ***** **** *** *********** ************ * ** **** *******
consensus_4413#0 ATTACTCGGAAAAAGGCCAAGTATGACGGGAGAAACGTTCAGTCAGATTTTGTCAACTGT 1320
consensus_4413#2 ATTACTCGGAAAAAGGCCAAGTATGACGGGAGAAACGTNCAGTCAGATTTTGTCAACTGT 417
consensus_4413#1 ATTACTCGGAAAAGGGCCAAGTATGATGGGAGAAGCGTTCATCCAGATTTTGTCAAGTAT 330
************* ************ ******* *** ** ************* * *
consensus_4413#0 CACACGGACAACAATGCAAGGAGGGAGATGTATGACCAGGACATGCTGCATACTGATGCC 1380
consensus_4413#2 CACACGGACAACAATGCAAGGAGGGAGATGTATGACCAAAAAAAAAAAAAAA-------- 469
consensus_4413#1 TACACGGATAACAATTCAAGGAGGGAGATGTATGACCAGGACATGCTGCATAGTGATGCC 390
******* ****** ********************** * * * *
consensus_4413#0 CACAGCCTTCAGCCTGATCAGTGCATTGAATGCCTCGACACGATGGCGGCCATCGCAGTC 1440
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 CACAGCCTTCAGCCTGATCAGTGCATTGAATGCCTCGACACGATGGCGGGCATCGCAGTC 450
consensus_4413#0 CGGTGTCTCAAAGATGACGTGGATGAGAGGCCCACCATGGCAGAGGTGCTGGAGGAGCTT 1500
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 CGGTGTCTCAAAGATGACGTGGATGAGAGGCCCACCATGGCAGAGGTGCTGGAGGAGCTT 510
consensus_4413#0 AAGCAGTTGAGAGCAAGCAACGAACTGATGGTGTAGAAGATGAACCAAGCCTGGTCTCCT 1560
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 AAGCAGTTGAGAGCAAGCAACGAACTGATCGTGTAGACAGATGAACCAAGCCTGGTCTCT 570
consensus_4413#0 CAGACTCGGTTGGTAGTCCATCGATATATGGATTCGTCCTTCTTGCTATTGTTTTCTCCG 1620
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 TCAGAATCGGTTGGTAGTCCATCGATATATGGATTCATGCCTCTCGCTATTGATTTCTCC 630
consensus_4413#0 TCGATCTCGCAGATGTGACGTTTGTTGCTTCCGCCGGGTTGTCCTGTTATGCTTGTAGAG 1680
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 GTCGATCTCGCAGATGTGACGTTTGTTGCTTCCACCGGGTTGTCCTGTTATGCTTGTAGA 690
consensus_4413#0 CTGCAGCATTGTGCTATTGTCGTTTAGTTTCCTCTTGTAACAAGTATCGATAACGATTCT 1740
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 GCAGCATATATTGTGCTATTGTACGTCGTTTAGTTTCCTCTTGTAACAAGTATCGATAAC 750
consensus_4413#0 TTTAGTTTCTGGTAA--------------------------------------------- 1755
consensus_4413#2 ------------------------------------------------------------
consensus_4413#1 GATATTGTAGTTCTGGTATATCACGAATAAATCGTGGCATAACTTAATTTATCAAGGAGA 810
consensus_4413#0 ----------
consensus_4413#2 ----------
consensus_4413#1 TGTATTTTTG 820
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||