Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4426 cluster # 4426       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4426#0 length = 613 sequences # 3  

consensusID : consensus_4426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 613
fasta sequence
                              [TCACCAGCTATCTCGATCGTGAGAGCTCCTCACAGCTTAGCA--TCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTGAAGATGCCTCGCTTGCTGCTCTTCTGCTTGGTGTCGAGCCAGCTCGCCATGACCGCCGTGATGGGCCGGCCATTCCCTCTCTTCTACGGCGGCGGCGGCGGCGCGGCGGCGAGCATCGCAGATGCGCCTACTTCTTCTTCTTCTTCAGATGGTGGTGGTGGTGGTGGTCATCTACTGCATGTGTATTCTCTTCTCGAGTCGAGCTTCGCGGAGTCGCCGATGAGCTCGCACCACCGCAACCACAGCCCGTTCGACCGGAAGTTCGCCGGCGGCAAGGTGATACTGGGCGGCCTGGCGGCGGCCATCTTCGCCGCCGTCTTCTGCTACATCCGGATCACGAGGAGGAAGAAGATCGAGCCCAAATCTTGATTACTCTATCGCATCACGCCTCAA-AAAAGAAAAAAAACAAACTCTTCTTTAATTTTTTTTCTTTTCTTACAGTGAGGAGACATGAACAAACGCATGTAACCCTCCTCATAGATTCGTTGCAAAACACTGTAAAGAATCCATTGCTGATGAAATAGGTGACAAATTTCCTC]

[+] EMBL CA765440             [TCACCAGCTATCTCGATCGTGAGAGCTCCTCACAGCTTAGCA      TCTCTCTCTCTCTCTTTCTCTCTCTCTGAAGATGCCTCGCTTGCTGCTCTTCTGCTTGGTGTCGAGCCAGCTCGCCATGACAGCCGTGATGGGCCGGCCATTCCCTCTCTTCTA   CGGCGGCGGCGGCGCGGCGGCGAGCATCGCAGATGCGCCTACTTCTTCTTCTTCTTCAGATGGTGGTGGTGGTGGTGGTCATCTACTGCATGTGTATTCTCTTCTCGAGTCGAGCTTCGCGGAGTCGCCGATGAGCTCGCACCACCGCAACCACAGCCCGTTCGACCGGAAGTTCGCCGGCGGCAAGGTGATACTGGGCGGCCTGGCGGCGGCCATCTTCGCCGCCGTCTTCTGCTACATCCGGATCACGAGGAGGAAGAAGATCGAGCCCAAATCTTGATTACTCTATCGCATCACGCCTCAA AAAGGAAAAAAAACAAACTCTTCTTTAATTTTTTTTCTTTTCTTACAGTGAGGAGACATGAACAAACGCATGTAACCCTCCTCATAGATTCGTTGCAAAACACTGTAAAGAATCCATTGCTGATGAAATAGGTGACAAATTTCCTC]
[+] EMBL AK107974             [  ACCAGCTATCTCGATCGTGAGAGCTCCTCACAGCTTAGCATCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTGAAGATGCCTCGCTTGCTGCTCTTCTGCTTGGTGTCGAGCCAGCTCGCCATGACCGCCGTGATGGGCCGGCCATTCCCTCTCTTCTACGGCGGCGGCGGCGGCGCGGCGGCGAGCATCGCAGATGCGCCTACTACTTCTTCTTCTTCAGATGGTGGTGGTGGTGGTGGTCATCTACTGCATGTGTATTCTCTTCTCGAGTCGAGCTTCGCGGAGTCGCCGATGAGCTCGCACCACCGCAACCACAGCCCGTTCGACCGGAAGTTCGCCGGCGGCAAGGTGATACTGGGCGGCCTGGCGGCGGCCATCTTCGCCGCCGTCTTCTGCTACATCCGGATCACGAGGAGGAAGAAGATCGAGCCCAAATCTTGATTACTCTATCGCATCACGCCTCAA AAAAGAAAAAAAACAAAC   TCTTTAA TTTTTTTCTTTTCTTACAGTGAGGAGACATGAACAAACGCATGTAACCCTCCTCATAGATTCGTTGCAAAACACTGTAAAGAATCCATTGCTGATGAAATAGGTGACAAAT      ]
[+] EMBL CA753461             [                   TGAGAGCTCCTCACAGCTTAGCA  TCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTGAAGATGCCTCGCTTGCTGCTCTTCTGCTTGGTGTCGAGCCAGCTCGCCATGACCGCCGTGATGGGCCGGCCATTCCCTCTCTTCTACGGCGGCGGCGGCGGCGCGGCGGCGAGCATCGCAGATGCGCCTACTTCTTCTTCTTCTTCAGATGGTGGTGGTGGTGGTGGTCATCTACTGCATGTGTATTCTCTTCTCGAGTCGAGCTTCGCGGAGTCGCCGATGAGCTCGCACCACCGCAACCACAGCCCGTTCGACCGGAAGTTCGCCGGCGGCAAGGTGATACTGGGCGGCCTGGCGGCGGCCATCTTCGCCGCCGTCTTCTGCTACATCCGGATCACGAGGAGGAAGAAGATCGAGCCCAAATCTTGATTACTCTATCGCATCACGCCTCAATAAAAGAAAAAAAAa                                                                                                                                    ]


>consensus_4426#0 TCACCAGCTATCTCGATCGTGAGAGCTCCTCACAGCTTAGCATCTCTCTCTCTCTCTCTC TTTCTCTCTCTCTGAAGATGCCTCGCTTGCTGCTCTTCTGCTTGGTGTCGAGCCAGCTCG CCATGACCGCCGTGATGGGCCGGCCATTCCCTCTCTTCTACGGCGGCGGCGGCGGCGCGG CGGCGAGCATCGCAGATGCGCCTACTTCTTCTTCTTCTTCAGATGGTGGTGGTGGTGGTG GTCATCTACTGCATGTGTATTCTCTTCTCGAGTCGAGCTTCGCGGAGTCGCCGATGAGCT CGCACCACCGCAACCACAGCCCGTTCGACCGGAAGTTCGCCGGCGGCAAGGTGATACTGG GCGGCCTGGCGGCGGCCATCTTCGCCGCCGTCTTCTGCTACATCCGGATCACGAGGAGGA AGAAGATCGAGCCCAAATCTTGATTACTCTATCGCATCACGCCTCAAAAAAGAAAAAAAA CAAACTCTTCTTTAATTTTTTTTCTTTTCTTACAGTGAGGAGACATGAACAAACGCATGT AACCCTCCTCATAGATTCGTTGCAAAACACTGTAAAGAATCCATTGCTGATGAAATAGGT GACAAATTTCCTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)