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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence
[GATCCAGACTGAGGAGGAGTAAGGGCTCATCGGTATGAGAATTTCAAGAAGTTGTCAAGGACTATCTACAAGTACAATCGCCAAGCGCGGAGCGCGAGGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAACAACATAAGAGTTAGGTGGACTGGGTACACTGGCTGATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATGATATTCGCCCTAATGAGAATGCCCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTCTCAATGCGGGACAAAGCAATGCGTCAAGCCGAGTTGCAGACAAACAGCAGCTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTTGTCCCCTGGGACAGTGATACCTGCTTGTAGCAATGTTTCATGGATGGTACTAAATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCTGAATTAGATGGACTAAGTCATGTGTAATTCTATTTTTCAGTTGCAACGTATGTCTGTTGTCTATTTGTGAAATTATGTCGTCCTAGCTGAACATTTAGTTCCAAAAAAAAAA]
[+] EMBL BI803252 [GATCCAGACTGAGGAGGAGTAAGGGCTCATCGGTATGAGAATTTCAAGAAGTTGTCAAGGACTATCTACAAGTACAATCGCCAAGCGCGGAGCGCGAGGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAACAACATAAGAGTTAGGTGGACTGGGTACACTGGCTGATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATGATATTCGCCCTAATGAGAATGCCCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTCTCAATGCGGGACAAAGCAATGCGTCAAGCCGAGTTGCAGACAAACAGCAGCTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTTGTCCCCTGGGACAGTGATACCTGCTTGTAGCAATGTTTCATGGATGGTACTAAATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCTGAATTAGATGGACTAAGTCATGTGTAATTCTATTTTTCAGTTGCAACGTATGTCTGTTGTCTATTTGTGAAATTATGTCGTCCTAGCTGAACATTTAGTTCCAAAAAAAAAA]
[+] EMBL BI803935 [ GAGCGCGAGGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAAC ACA AAGAGTTAGGTGGACTGGGTACACTGGCTGATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATGATATTCGCCCTAATGAGAATG CCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTCTCAATGCGGGAC AAGC ATGCGTCAAGCCGAGTTGCAGACAAACAGCAGCTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTTGT CCCTGGGACAGTGATACCTGCTTGTAGC ATGTTTCATGGATGGTACTAAATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCTGAATTAGATGGACTAAGTCATGTGTAATTCTATTTTTCAGTTGCAACGTATGTCTGTTGTCTATTTGTGAAATTATGTCGTCCTAGCTGAACATTTAGTTCCAAAAAAAAAA]
consensusID : consensus_4435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[TGACAAGTTCAACGCCGAGCGCGGAACGCGAAGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAGCCAAGAAGAGTTGGACGGACTGGGTACTCTGGCTGATGAATCACACTGGGAGGGGTATCTCGATCACGTCCACACTATGATTGCTCGGGGTAACGATATTCGCCATAATGAGAATGCCTGCGAGGCCGTGAAGAAGGTACTCAATGTCTATCCCTAATTATCTGCGCAAGNTATTGTTGTTCATTCAGTATGGCCACTAGAAGGAGTATCAGATCTTGTTTAATTTGGAAGCCTGCAATCATATATTTATCTATAAGTTCGCATGATATATGCCGCTTTATAATTAGCGAATTGGCTTTTCGATTTCCAATTGATGAAAGTTGTTCTAGTTTGATATTATCTCTCCTGGCTAGTCGTAAGCCATTGCACAGCAGTCGTAGCAAAGTAGAAACTGCACCGTAGGAGCACTGTAGGCAATGTTATCTGCTCTTTTCTTCAGTCTAATTAGTTATCAGTTGCTCTATTAGCCATTTGGAACTAGCAGCTAACAATTCTTTCTTCGCA]
[+] EMBL CF324184 [TGACAAGTTCAACGCCGAGCGCGGAACGCGAAGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAGCCAAGAAGAGTTGGACGGACTGGGTACTCTGGCTGATGAATCACACTGGGAGGGGTATCTCGATCACGTCCACACTATGATTGCTCGGGGTAACGATATTCGCCATAATGAGAATGCCTGCGAGGCCGTGAAGAAGGTACTCAATGTCTATCCCTAATTATCTGCGCAAGNTATTGTTGTTCATTCAGTATGGCCACTAGAAGGAGTATCAGATCTTGTTTAATTTGGAAGCCTGCAATCATATATTTATCTATAAGTTCGCATGATATATGCCGCTTTATAATTAGCGAATTGGCTTTTCGATTTCCAATTGATGAAAGTTGTTCTAGTTTGATATTATCTCTCCTGGCTAGTCGTAAGCCATTGCACAGCAGTCGTAGCAAAGTAGAAACTGCACCGTAGGAGCACTGTAGGCAATGTTATCTGCTCTTTTCTTCAGTCTAATTAGTTATCAGTTGCTCTATTAGCCATTTGGAACTAGCAGCTAACAATTCTTTCTTCGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4435#0 GATCCAGACTGAGGAGGAGTAAGGGCTCATCGGTATGAGAATTTCAAGAAGTTGTCAAGG 60
consensus_4435#1 ------------------------------------------------------------
consensus_4435#0 ACTATCTACAAGTACAATCGCCAAGCGCGGAGCGCGAGGCTCTTTACTTGCCCCTTTAGC 120
consensus_4435#1 -----TGACAAGTTCAA-CGCCGAGCGCGGAACGCGAAGCTCTTTACTTGCCCCTTTAGC 54
****** *** **** ******** ***** **********************
consensus_4435#0 CCCTAACGAACTCGCGGACTACAACAACATAAGAGTTAGGTGGACTGGGTACACTGGCTG 180
consensus_4435#1 CCCTAACGAACTCGCGGACTACAGCCA-AGAAGAGTTGGACGGACTGGGTACTCTGGCTG 113
*********************** * * * ******* * *********** *******
consensus_4435#0 ATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATG 240
consensus_4435#1 ATGAATCACACTGGGAGGGGTATCTCGATCACGTCCACACTATGATTGCTCGGGGTAACG 173
******************* ***** ****** ************* *** ******* *
consensus_4435#0 ATATTCGCCCTAATGAGAATGCCCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTC 300
consensus_4435#1 ATATTCGCCATAATGAGAATGCC-TGCGAGGCCGTGAAGAAG-GTACTCAATGTCTATCC 231
********* ************* ** ***** ********* * * **** *
consensus_4435#0 TCAAT-------GCGGGACAAAGCAATGCGTCAAGCCGAGTTGC--AGACAAACAGCAG- 350
consensus_4435#1 CTAATTATCTGCGCAAGNTATTGTTGTTCATTCAGTATGGCCACTAGAAGGAGTATCAGA 291
*** ** * * * * * * ** * * * * * ***
consensus_4435#0 ------CTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTT 404
consensus_4435#1 TCTTGTTTAATTTGGAAGCCTGCAATCATATATTTATCTATAAGTTCGCA--TGATATAT 349
** * * *** * **** * * * ** * * *** **** * *
consensus_4435#0 GTCCCCTGGGA--CAGTGATACCTGCTTGTAGCAATGTTTCATGGATG------GTACTA 456
consensus_4435#1 GCCGCTTTATAATTAGCGA-ATTGGCTTTT--CGATTTCCAATTGATGAAAGTTGTTCTA 406
* * * * * ** ** * **** * * ** * ** **** ** ***
consensus_4435#0 AATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCT 516
consensus_4435#1 GTTTGATATTATCTCTCCTGGCTAGTCGTAAGCCATTGCACAGCA-GTCGTAGCAAAGTA 465
* * ***** * * * ** *** * ** * ***
consensus_4435#0 GAAT--------TAGATGGACT--AAGTCATGTG--TAATTCTATTTTTCAGTTGCAACG 564
consensus_4435#1 GAAACTGCACCGTAGGAGCACTGTAGGCAATGTTATCTGCTCTTTTCTTCAGTCTAATTA 525
*** *** * *** * * **** *** ** ****** *
consensus_4435#0 TATGTCTGTTG-TCTATTTGTGAAATTATGTCGTCCTAGCTG--AACATTTAGTTCCAAA 621
consensus_4435#1 GTTATCAGTTGCTCTATT-----AGCCATTTGGAACTAGCAGCTAACAATTCTTTCTTCG 580
* ** **** ****** * ** * * ***** * **** ** ***
consensus_4435#0 AAAAAAA 628
consensus_4435#1 CA----- 582
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||