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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 444 cluster # 444       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_444#0 length = 559 sequences # 1  
consensus_444#1 length = 365 sequences # 1  

consensusID : consensus_444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence
                              [TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCGCGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGCGATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGCAGATGCATCCCAAATTTCT]

[+] EMBL CF315759             [TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCGCGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGCGATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGCAGATGCATCCCAAATTTCT]


>consensus_444#0 TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCG CGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGC GATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAG GAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGT TTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGAC CAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAA CAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTC TCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGC CATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGC AGATGCATCCCAAATTTCT



consensusID : consensus_444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence
                              [TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATGCTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCCATCTG]

[+] EMBL AU030643             [TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATGCTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCCATCTG]


>consensus_444#1 TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATG CTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTT TCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACC AATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAAC AGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCT CAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCC ATCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_444#0      TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCG 60
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      CGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGC 120
consensus_444#1      -------------------------------------------------TGTATTTCC-- 9
                                                                       * *** **  

consensus_444#0      GATAATTCTGGCCT--CAGCGCTTGGTACGATTCGGTGGATTTG-TTGATGGTCATCTAA 177
consensus_444#1      -TGAACTCTGAACAAACAGTACTGGTTGTCGTTC--TGAATTGAACTGTAAATGCTATAC 66
                        ** ****  *   ***  ** * *    ***  ** ***    **    *  * ** 

consensus_444#0      CAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCG 237
consensus_444#1      CACTAGACTTGATCGATTCGTTTCTAGCGGCATG--CTAATTGTTCCATTGCAG------ 118
                     **  **    ***** ****     **  * * *   * *  *   **  * **      

consensus_444#0      CGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCG 297
consensus_444#1      --TTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCG 176
                       **********************************************************

consensus_444#0      GACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTA 357
consensus_444#1      GACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTA 236
                     ************************************************************

consensus_444#0      AAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAG 417
consensus_444#1      AAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAG 296
                     ************************************************************

consensus_444#0      TTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAA 477
consensus_444#1      TTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAA 356
                     **************************************** *** ***************

consensus_444#0      GGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACA 537
consensus_444#1      GGCCATCTG--------------------------------------------------- 365
                     ********                                                    

consensus_444#0      AGCAGATGCATCCCAAATTTCT 559
consensus_444#1      ----------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)