These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCGCGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGCGATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGCAGATGCATCCCAAATTTCT] [+] EMBL CF315759 [TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCGCGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGCGATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGCAGATGCATCCCAAATTTCT] consensusID : consensus_444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATGCTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCCATCTG] [+] EMBL AU030643 [TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATGCTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCCATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_444#0 TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCG 60 consensus_444#1 ------------------------------------------------------------ consensus_444#0 CGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGC 120 consensus_444#1 -------------------------------------------------TGTATTTCC-- 9 * *** ** consensus_444#0 GATAATTCTGGCCT--CAGCGCTTGGTACGATTCGGTGGATTTG-TTGATGGTCATCTAA 177 consensus_444#1 -TGAACTCTGAACAAACAGTACTGGTTGTCGTTC--TGAATTGAACTGTAAATGCTATAC 66 ** **** * *** ** * * *** ** *** ** * * ** consensus_444#0 CAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCG 237 consensus_444#1 CACTAGACTTGATCGATTCGTTTCTAGCGGCATG--CTAATTGTTCCATTGCAG------ 118 ** ** ***** **** ** * * * * * * ** * ** consensus_444#0 CGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCG 297 consensus_444#1 --TTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCG 176 ********************************************************** consensus_444#0 GACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTA 357 consensus_444#1 GACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTA 236 ************************************************************ consensus_444#0 AAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAG 417 consensus_444#1 AAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAG 296 ************************************************************ consensus_444#0 TTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAA 477 consensus_444#1 TTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAA 356 **************************************** *** *************** consensus_444#0 GGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACA 537 consensus_444#1 GGCCATCTG--------------------------------------------------- 365 ******** consensus_444#0 AGCAGATGCATCCCAAATTTCT 559 consensus_444#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||