These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAGAGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTAGCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGACGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTGGTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTCCGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCTTCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACGACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCACTAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCC-TTGGTAAATAATCATCACATCGTAAATTTGTCTGAGAATCAAATTGAGTGGA-TTCTGTTTATACAATTAGAGGCATGTATATGGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTCAGGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTGACTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCANCCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACACTTTAACAG] [+] EMBL CA753327 [CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAGAGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTAGCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGACGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTGGTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTCCGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCTTCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACGACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCACTAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCC TTGGTAAATAATCATCACATCGTAAATTTGTCTGAGAATCAAATTGAGTGGA TTCTGTTTATACAATTAGAGGCATGTATATGGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTCAGGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTGACTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCANCCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACACTTTAACAG] [+] EMBL AK062919 [ GCTAGCTACCCTTCCAAACAAGAGAGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTAGCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGACGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTGGTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTCCGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATGGCTTCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACGACGTACTACTACTCGCCGGTGGTGGCCTCCATGATCGGCATGTCCAGGCTTGACAGGCACTAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATATGGATATGTCAA ] consensusID : consensus_4443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [TTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATATGGATATGTGTAGCTCACCCTAGCTAGTGCCTGTCAAGCCTGGACATGCCGATCATGGAGGCCACCACCGGCGAGTAGTAGTACGTCGTCGTC] [+] EMBL OSC1831 [TTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATATGGATATGTGTAGCTCACCCTAGCTAGTGCCTGTCAAGCCTGGACATGCCGATCATGGAGGCCACCACCGGCGAGTAGTAGTACGTCGTCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4443#0 CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAG 60 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 AGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTA 120 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 GCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGA 180 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 CGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTG 240 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 GTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTC 300 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 CGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCT 360 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 TCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACG 420 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 ACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCAC 480 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 TAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCCTTGGTAAATAATCATCACATCG 540 consensus_4443#1 --------------------------------TTGCCTTTGTTAAATAATCATCACATCG 28 ** * *** ****************** consensus_4443#0 TAAATTTGTCTGAGAATCAAATTGAGTGGATT-CTGTTTATACAATTAGAGGCATGTATA 599 consensus_4443#1 TTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATA 88 * ************************* ** * *************************** consensus_4443#0 TGGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTC 659 consensus_4443#1 TGGATATGT------GTAGCTCACCCTAGCTAGTGCCTGTCAAGCCTGGACATGCCGATC 142 ********* * * * * * ** * * * * * ** consensus_4443#0 AGGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTG 719 consensus_4443#1 ATGGAGGCC---ACCACCGGCGAGTAGTAGTACGTCGTCGTC------------------ 181 * ** **** ***** ** * **** ** * consensus_4443#0 ACTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCA 779 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 NCCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACAC 839 consensus_4443#1 ------------------------------------------------------------ consensus_4443#0 TTTAACAG 847 consensus_4443#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||