These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1346 fasta sequence [CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGCGGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGCGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGCCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTTGGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAAGAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGAGACTGATTCAAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACACTGGAGGGAGTTGTTAATGAGATTGTGGATGACAAAAGGAAAGGTT-CCGCCCCTGGTTTTTCCAACAAGGAGGAAGCCA-CAAAGAAAGGTG-GAGACAAAGCAATTCCACTGATGGCCAGGT-AGTGCCAGTCAAGAGTAAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTACGCAACAGAGCCCTACAGGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAATCTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTTTTTTGTTGATCAAGCATGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTGCATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTAGAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACGCCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATTTTGTGTCTAGACATTGTTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGAGGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAGAAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATACGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGTAAACACTAACCCATTTGAAGGTTCCAATTTCAAGAATGCAGA] [+] EMBL AK063626 [CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGCGGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGCGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGCCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTTGGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAAGAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGAGACTGATTCAAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACACTGGAGGGAGTTGTTAATGAGATTGTGGATGACAAAAGGAAAGGTT CCGCCCCTGGTTTTTCCAACAAGGAGGAAGCCA CAAAGAAAGGTG GAGACAAAGCAATTCCACTGATGGCCAGGT AGTGCCAGTCAAGAGTAAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTACGCAACAGAGCCCTACAGGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAATCTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTTTTTTGTTGATCAAGCATGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTGCATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTAGAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACGCCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATTTTGTGTCTAGACATTGTTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGAGGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAGAAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATACGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGTAAACACTAACCCATTTGAAGGTTCCAATTTCAAGAATGCAGA] [+] EMBL CA753255 [ CGGCGATGCTTCCGGCGGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGCGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGCCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTTGGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAAGAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGAGACTGATTCAAAGCTGTCAGCAGTTTTAGTCAGGTTAGATACACTGGAGGGAGTNGTNAATGAGATTGTGGATGACAACAGGAAAGGTTCCCGCCCCTGGTTTTTCCAACCAGGAGGAAGCCACCAACAAAATGTGAGAGACAAAGCAATTCCACTGATTGCCAGGTAATTGCC GTCAAGAGTAAGGACATCATCAATTGTGGCACAAACCCTTCACCCAATT TTCGCCACAGAcc ] consensusID : consensus_4455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCTCCACCGACGAAGCGGTGAGGTACGGCGAAGTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGNCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNGCCACCCAAGCGCAAGGAATTNGGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGCCTNCCTTCTCTAGCCGTTTATTTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGAATGAGAGGCAGAAGCAGATAGAGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAAACNAAATTGATGCAGATTCTNATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAGNTTTA] [+] EMBL D42774 [TCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCTCCACCGACGAAGCGGTGAGGTACGGCGAAGTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGNCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNGCCACCCAAGCGCAAGGAATTNGGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGCCTNCCTTCTCTAGCCGTTTATTTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGAATGAGAGGCAGAAGCAGATAGAGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAAACNAAATTGATGCAGATTCTNATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAGNTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4455#0 CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGC 60 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 GGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTC 120 consensus_4455#1 --------------------------------------TCCGGAGCCGCCTCCTCTCCTC 22 ********************** consensus_4455#0 CTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGG-G 179 consensus_4455#1 CTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCTCCACCGACGAAGCGGTGAGGTA 82 *********************************** ********************** consensus_4455#0 CGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACG 239 consensus_4455#1 CGGCGAAG-TGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACG 141 ******** *************************************************** consensus_4455#0 CCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTG-CCACCCAAGCGCAAGGAATTC 298 consensus_4455#1 NCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNGCCACCCAAGCGCAAGGAATTN 201 ** ********************************* ******************** consensus_4455#0 GGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTAT 358 consensus_4455#1 GGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGCCTNCCTTCTCTAGCCGTTTAT 261 *********** ***************************** ****************** consensus_4455#0 TT-GGTTGCTCA-GTATGCACGGAGTGAGAT-CAAAAGGATG-GAGGCAGAAGCAGA-AG 413 consensus_4455#1 TTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGAATGAGAGGCAGAAGCAGATAG 321 ** ******** ************ *** ****** *** ************** ** consensus_4455#0 AGAAAAAGAAAAAGGATGA-GGAACTGGAGAAAG--AAAAACAGCTTGAAGCAGATTCTG 470 consensus_4455#1 AGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAAACNAAATTGATGCAGATTCTN 381 ****************** ** *** ****** **** * **** ********* consensus_4455#0 TTAAGGAT--GAGACTGATTC----AAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACAC 524 consensus_4455#1 ATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAGNTTTA---------------- 425 * *** * ** *** * ** * ***** **** consensus_4455#0 TGGAGGGAGTTGTTAATGAGATTGTGGATGACAAAAGGAAAGGTTCCGCCCCTGGTTTTT 584 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 CCAACAAGGAGGAAGCCACAAAGAAAGGTGGAGACAAAGCAATTCCACTGATGGCCAGGT 644 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 AGTGCCAGTCAAGAGTAAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTAC 704 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 GCAACAGAGCCCTACAGGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAAT 764 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 CTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTT 824 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 TTTTGTTGATCAAGCATGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTG 884 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 CATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTA 944 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 GAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACG 1004 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 CCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATT 1064 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 TTGTGTCTAGACATTGTTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGA 1124 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 GGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAG 1184 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 AAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATA 1244 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 CGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGT 1304 consensus_4455#1 ------------------------------------------------------------ consensus_4455#0 AAACACTAACCCATTTGAAGGTTCCAATTTCAAGAATGCAGA 1346 consensus_4455#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||