cluster # 4459

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Oryza sativa
cluster # 4459 cluster # 4459 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4459#0 length = 1055 sequences # 2

consensus_4459#1 length = 478 sequences # 1

consensusID : consensus_4459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1055
fasta sequence

                              [CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTCCCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCCGGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGACACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCCGTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGTCAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCTGCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGACGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTGGGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATCTTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAGGGGAATGGAGGTTTATCTCATAATCACCTCTTAAT]

[+] EMBL AK064266             [CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTCCCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCCGGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGACACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCCGTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGTCAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCTGCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGACGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTGGGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAA                                                                                                  ]
[-] EMBL CB650836             [                                                                                                                                                                                                                                                                                                                                                             GCCGAGGACCTGCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGACGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTGGGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAGGGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCGGTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAGCTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGCCAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTGAGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATCTTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAGGGGAATGGAGGTTTATCTCATAATCACCTCTTAAT]




>consensus_4459#0
CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTC
CCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCC
GGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGA
CACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCC
GTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGT
CAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCT
GCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGA
CGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTG
GGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAG
GGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCG
GTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAG
CTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTG
CGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCT
GCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGC
CAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTG
AGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATC
TTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAG
GGGAATGGAGGTTTATCTCATAATCACCTCTTAAT

consensusID : consensus_4459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAAGCGCCAGCGGGCCGGGCGCGCCCCGGGGGGCTTACCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGGGAAAAAATCCTTTTTCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGACCCGGAGGGGTTGGGGGGGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGGCCAAAAGGGGAAAAGGGGTATAAACCCAAAAAAAATTTTTTTTAAACCCCCCCGGGGGGCCCCCCAGGGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGGGGGGGTTTTTTTTAAAAAAAAAACCCCCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG]

[+] EMBL BE040423             [CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAAGCGCCAGCGGGCCGGGCGCGCCCCGGGGGGCTTACCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGGGAAAAAATCCTTTTTCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGACCCGGAGGGGTTGGGGGGGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGGCCAAAAGGGGAAAAGGGGTATAAACCCAAAAAAAATTTTTTTTAAACCCCCCCGGGGGGCCCCCCAGGGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGGGGGGGTTTTTTTTAAAAAAAAAACCCCCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG]




>consensus_4459#1
CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCAC
GCTGACAACGGCATGCTGCGGTTCTACCTCACGCCGATGCGGAAGCGCCAGCGGGCCGGG
CGCGCCCCGGGGGGCTTACCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGG
GAAAAAATCCTTTTTCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGACCCGG
AGGGGTTGGGGGGGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGG
CCAAAAGGGGAAAAGGGGTATAAACCCAAAAAAAATTTTTTTTAAACCCCCCCGGGGGGC
CCCCCAGGGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGG
GGGGGTTTTTTTTAAAAAAAAAACCCCCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4459#0      CGGCCGCGCGCCCCCGCCGCTCTCCCGCCTGCCGCCCATTCTCTCCGCGATGGAGGACTC 60
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      CCCAGCCGGCATCGTCGAGCGTTCCGACGGCCAAATCCCGGTGGAGGACGACTCCCAGCC 120
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      GGAGCCCGATCCCGACGCCGACACCCCGGGCGGCTCGGTGCAGACCCGAGACTATTACGA 180
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      CACGTCGTCGTCAAGCCGGAGGCGGCGGAGCCTGGAGCGGACCAGCTCGGTGCGGAGGCC 240
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      GTCATTCGAAGTCACCGACGCAAAGCCAGTGCTGCCGGCGGCGGCCGCCATAACAAGCGT 300
consensus_4459#1      ----------------------------CGGCGGCGGGAGGAGTGCGCCCTGGAGCGCAA 32
                                                    ** ** ** ** *  **** *     **  

consensus_4459#0      CAAAGATTCGCCGCTAATTGGGAGCTCAGAGTTCTACCACTTCCAGCATGCCGAGGACCT 360
consensus_4459#1      CCGCAGCGCGC-GCTACTCG------CCGGGGCACGCTGACAACGGCATGCTGCGGTTCT 85
                      *       *** **** * *      * * *     *      * ****** * **  **

consensus_4459#0      GCTCGAACACCACCGGTTCAGCACCAGCTCCCTCATCGAAGACTTCCCCATGAGCCTGGA 420
consensus_4459#1      ACCTCA----CGCCGATGCGGAAGC-GCCAGCGGGCCGGGCGCGCCCCGGGGGGCTT--A 138
                       *   *    * *** * * * * * **   *    **    *  ***   * ** *  *

consensus_4459#0      CGCCGCGTTCCCGGGCCCCGACAAGAAGCCCCGGAGGTGGCGCAAGGCGTGGAGCCTCTG 480
consensus_4459#1      CCCGGGGCCAAAAGGGGGGGGCGGGAAAACTTAAGGGGGGGGGAAAAAAT----CCTTTT 194
                      * * * *      **    * *  ***  *     ** ** * **    *    *** * 

consensus_4459#0      GGGCCTGATACACCGCCGCGCCGCCGGCCGCAGGGGCGGCGCGTCCGACGTCGCGGACAG 540
consensus_4459#1      TCCCCCCCCCCCGTTTAAAAAATGGGGCCCCGGGGGTGGGAC--CCGGAGGGGTTGGGGG 252
                         **     *              **** * **** **  *  ***  *  *  *   *

consensus_4459#0      GGCCTTCTCGGAGCCGTGGCCGGAGCTGCGCGTCCGCGGGTGCAACGCCAGGATGCAGCG 600
consensus_4459#1      GGTNTTTTTTTGGGGGGGGGCGGGGCCCCACCAGTTTGGGGGGGGGGGCCAAAAGGGGAA 312
                      **  ** *    *  * ** *** **  * *      *** *    * *   * *  *  

consensus_4459#0      GTGCAACAGCAACGCCAGCGCGCGGAGCTCTTTCAGCAGCAACAGCGGCGGCCTCGGCAG 660
consensus_4459#1      AAGGGGTATAAACCCAAA-----AAAAATTTTTTTTAAACCCCCCCGGGGGGCCCCCCAG 367
                        *    *  *** * *        *  * ***    * *  *  *** ** * *  ***

consensus_4459#0      CTCGAGGCGCAGCTACGTCGACGGCAACGGCAACGTCGTCAAGCGGCGGCGGGAGGAGTG 720
consensus_4459#1      GGGGAAATCCCCCCGCCCTTTTGGGGGGGGGGGGTTTTTTAAAAAAAAGGGGGGGGGGTT 427
                         **    *  *  *      **    **     *  * **      * *** ** ** 

consensus_4459#0      CGCCCTGGAGCGCAACCGCAGCGCGCGCTACTCGCCGGGGCACGCTGACAACGGCATGCT 780
consensus_4459#1      TTTTTTAAAAAAAAAACCC--CCCTTTTTAGNNGGGGAAAAAAAGAAAAAAGG------- 478
                           *  *    ** * *  * *    **   *  *    *     * ** *       

consensus_4459#0      GCGGTTCTACCTCACGCCGATGCGGAGCGCCAGCGGCCGGCGCGCCCCGGGGCTACCGGC 840
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      CAAAGGCGGCCGGCAACTGAGGTCGCAATCGTTCGCGCGTAGCATGCTCCGGCTGTACTG 900
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      AGTTGTGTTTTTCGTTGCAGCAGTAGTGGAGGCTCAATGGCAATGGTATAACCATAAATC 960
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      TTTTTTTACATCCTTGTGTAGCGCAGTGTTAATTCCGTTCATTTGGGGGGTTGGATTAAG 1020
consensus_4459#1      ------------------------------------------------------------
                                                                                  

consensus_4459#0      GGGAATGGAGGTTTATCTCATAATCACCTCTTAAT 1055
consensus_4459#1      -----------------------------------