These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 664 fasta sequence [GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAGCCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGATATAAGATTTTCAGCAACGCCTGTTGGCG-GGGAATTTTGGCAATATATTGCAAGCCGACAATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTC] [+] EMBL CF306022 [GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAGCCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGATATAAGATTTTCAGCAACGCCTGTTGGCG GGGAATTTTGGCAATATATTGCAAGCCGACAATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCACCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAATATATATTATTTACCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTTTTAATTCTGCCTCTTTC] [+] EMBL CF306050 [ CGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAGCCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTCATCATTAAATTCACATTTGTGATATAAGATTTTCAGCAACGCCTGTTTGTGTGGGAATTTTGGCAATATATTGCAAGCCGACAATCAATANTTCACTCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTCAAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGTTGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCGTCGGCAATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTGCGCAAACTGGGCGATGGCAGTTTCAATCAGTTCTTGCCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAATTATTCAGGAAATAAATATATTCGACACA ] consensusID : consensus_4466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTACCCGTCTGACGCGTGCCTAACAATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGCAATCACAAAACCGTCGTTACTGTCGCGCAGCACTTGCAGGCGAATTTGCGCCGTTTTAGAAAGCGGCGTTTTGTAGAGCAGCACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCCCGCGCAGCTGGTGTAACTGCGCCAGACCCAGACGCTCCGGGTTTTCGATAATCATCAGACTGGCGTTAGGCACATCAACGCCGACTTCAATAACGGTTGTGGCAACCAGCAGGTGTAGCTCACCTTGTTTAAACGACGCCATCACCGCCTGTTTCTCGGCAGGTTTCATCCGCCCGTGTACCAGGCCAACGTTCAACTCTGGTAGCGCCAGTTTCAACTCTTCCCAGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGACTCTTCAATCAACGTACAAACCCAGTATGCCTGACGACC] [+] EMBL CF305656 [TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTACCCGTCTGACGCGTGCCTAACAATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGCAATCACAAAACCGTCGTTACTGTCGCGCAGCACTTGCAGGCGAATTTGCGCCGTTTTAGAAAGCGGCGTTTTGTAGAGCAGCACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCCCGCGCAGCTGGTGTAACTGCGCCAGACCCAGACGCTCCGGGTTTTCGATAATCATCAGACTGGCGTTAGGCACATCAACGCCGACTTCAATAACGGTTGTGGCAACCAGCAGGTGTAGCTCACCTTGTTTAAACGACGCCATCACCGCCTGTTTCTCGGCAGGTTTCATCCGCCCGTGTACCAGGCCAACGTTCAACTCTGGTAGCGCCAGTTTCAACTCTTCCCAGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGACTCTTCAATCAACGTACAAACCCAGTATGCCTGACGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4466#0 GCGACAGTAACGACGGTTTTGTGATTGCGCAAAAAGATCTGGAGAGTCTGCGGATTAAAG 60 consensus_4466#1 ---------------------TGATCGCGCAGTAAATCCGCCACTTTAAATTCAGCATTA 39 **** ***** ** * * * * * consensus_4466#0 CCCATCTTTTCGCGTATCACTCCCTCGGCCAGCATCTC--ATCATTAAATTCACATTTGT 118 consensus_4466#1 CCCGTCTGA-CGCGTGCCTAACAATTCGCCAGGGCCGCGAATCTCCAGATCTTTTTGCGC 98 *** *** ***** * * * ***** * * *** * ** * * consensus_4466#0 GAT-ATAAGATTTTCAGCAACGCC------TGTTGGCGGGGAATTTTGGCAATATATTGC 171 consensus_4466#1 AATCACAAAACCGTCGTTACTGTCGCGCAGCACTTGCAGGCGAATTTG-CGCCGTTTTAG 157 ** * ** * ** * * * * ** ** * **** * * ** consensus_4466#0 AAGCCGACAATCAATTTTTCACGCAATTGTTGAAACGGGTCATGCTCTAATCCAGCCGTC 231 consensus_4466#1 AAAGCGGCGTTTTGTAGAGCAGCACGCAGTGAGAAGCCACCGCGCCACGACCTACGCGCC 217 ** ** * * * ** ** ** * ** * * * ** * consensus_4466#0 AAGTGTTCCTGGATTAACTCCCGCAATGAAGGCTGTTGCAACCACATCTCATTAAACAGT 291 consensus_4466#1 C-GCGCAGCTGGTGTAACT---GCGCCAGACCCAGACGCTCCGGGTTTTCGATAATCA-- 271 * * **** ***** ** * * * ** * * ** *** ** consensus_4466#0 TGAGTCTTGTTTTCGAAGTGCCAGTAGATAGCGCCACGCGTAACGTTAGCGGCG-TCGGC 350 consensus_4466#1 TCAGACTGGCGTTAGGCACATCA----ACGCCGACTTCAATAACGGTTGTGGCAACCAGC 327 * ** ** * ** * ** * ** * ***** * * *** * ** consensus_4466#0 AATGTCGTTGAGCGTCGTCTTGCTTACGCCATGCTG-CGCAAACTGGGCGATGGCAGTTT 409 consensus_4466#1 AG----GTGTAGC-TCACCTTGTTTAAACGACGCCATCACCGCCTGTTTCTCGGCAGGTT 382 * ** *** ** **** *** * * ** * * *** ***** ** consensus_4466#0 CAATCAGTTCTTG--CCGGGTCTTCAGAGCTTCGGCTTTGGTTCTTTTTGCCATGATTAA 467 consensus_4466#1 TCATCCGCCCGTGTACCAGGCC----AACGTTCAACTCTGGTAGC----GCCAGTTTCAA 434 *** * * ** ** ** * * *** ** **** **** * ** consensus_4466#0 TTATTCAGGAAATAAATATATTCGACACAGAGTGAGAAAATAGCGAAGGTTAATCTATCA 527 consensus_4466#1 CTCTTCCC-AGGTAGCTTCCGCCGCCTGCGCTTCCAGCAATTCCGACTCTTCAATCAACG 493 * *** * ** * ** * * * *** *** ** * * * consensus_4466#0 CCTAATGTGTATTTATACGAGAGGCTAATATTGAGTTGCTATAAATCGTTAAATAAATAA 587 consensus_4466#1 TACAAACCCAGTATGCCTGACGACC----------------------------------- 518 ** * * ** * consensus_4466#0 TATATATTATTTACCTAAGATACATTCACTACATCAATATATATTTCAATTTACGAGGTT 647 consensus_4466#1 ------------------------------------------------------------ consensus_4466#0 TTAATTCTGCCTCTTTC 664 consensus_4466#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||