These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTTCTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATCTCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGCATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGGGGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATGGAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATGCGA] [+] EMBL CB647314 [CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTTCTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATCTCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGCATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGGGGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATGGAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATGCGA] consensusID : consensus_4469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATGGATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACTGCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTTCTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAGAATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTTTGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGTGNT] [+] EMBL CA764304 [GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATGGATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACTGCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTTCTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAGAATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTTTGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGTGNT] consensusID : consensus_4469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCCCCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGTTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGCGAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGCAAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGCATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAAGCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGAAGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGGACCCCTGGAAAGCCGGTGCGTGGTAAACG] [+] EMBL CB647315 [GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCCCCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGTTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGCGAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGCAAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGCATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAAGCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGAAGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGGACCCCTGGAAAGCCGGTGCGTGGTAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4469#0 ----------------------------------------------CGGCCTCCCTCGGC 14 consensus_4469#1 GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATG 60 consensus_4469#2 ------------------------------------------GACCTATTCTTCTTCTTC 18 * * consensus_4469#0 GGCGGCG------CTGGAGGAATCGCA-TTGGAAAAGTGCGGCGTGATCGCGTGCACGCC 67 consensus_4469#1 GATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCC 120 consensus_4469#2 AAACGCAT-----CCAAATGACTTGC----------GCATTGTTTGA-CAAGTGTTCCCC 62 * * * * ** * * *** * *** * ** consensus_4469#0 GACTAGAAGAAAGGAGATAGGCTA-CACACGC-ACGAGGGGCGC----GCACTCACCGGG 121 consensus_4469#1 GACTAGAAGAAAGGAGATAGGCTA-CACACGC-ACGAGGGGCGC----GCACTCACCGGG 174 consensus_4469#2 AGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATG 122 * **** * ***** * * ** * ** *** * * ***** * consensus_4469#0 CAGAGCAACCCAATCCTTATGAAGAACGGGAGCAAC-GTGCTCAGGGCAAAGAGAGCCGT 180 consensus_4469#1 CAGAGCAACCCAATCCTTATGAAGAACGGGAGCAAC-GTGCTCAGGGCAAAGAGAGCCGT 233 consensus_4469#2 TTCA-TAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGT 181 * ** *** * * * * *** * ** * * * * ** consensus_4469#0 TTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTT 240 consensus_4469#1 TTTCTACTGTATTTTGCAGATGCA-----------GTTTGCAGCAGCTGTAGCTGCCCCA 282 consensus_4469#2 TGGGCACTTGAGCGTGTCTGCAAACCGACCAA---GCATTGGTCAACTGAAGTTGAATCG 238 * *** * * * * ** * consensus_4469#0 CTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATC 300 consensus_4469#1 GTGGGCGAGCTACCAACTGC-----------ACGCTCGCCGATT--CAACTTCAGTTGAC 329 consensus_4469#2 GCGAGCGTGCAGTTGGTAGCT-----------CCCCCACTGGGG--CAGCTACAGCTGCT 285 * * * * * * consensus_4469#0 TCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGC 360 consensus_4469#1 CA---ATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCA 386 consensus_4469#2 GC---AAACTGCATCTG-CAAAATACTC-CTAAAACAGGTAAGCTGCCCACAGGTGAGCA 340 * ** * * * * ** * * consensus_4469#0 ATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGG 420 consensus_4469#1 GTTCAAA-GGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTG--AAA 443 consensus_4469#2 TTGCAGGGGGGAGCAG-GCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAA 399 * * ** ** * ** ** * * * * ** * * consensus_4469#0 --GGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTT 478 consensus_4469#1 --AGCCACTTGCA--ATCTGCATTGCTGAA-TCTCTGT-CTTTCTTG----------CTG 487 consensus_4469#2 CAATTGAATTAACACAACTGCATCTATAAA--ATGAGATCTATCTTGGACC---TAACAA 454 * * ** * ** * * ** * *** consensus_4469#0 TTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAA 538 consensus_4469#1 TGGAACACTTGTCAAACAATGCGCAAGTC---ATCTGGATGCGTTTGAAGAAGAAGAATA 544 consensus_4469#2 CAGCAAGATCGGCAGAAGATCTCCAAGCT---ACTAGTA---GCATGGACTCTTTGCGTG 508 * * * * * * * * * consensus_4469#0 TGGAAAAAAAACCCGA---AAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAA 595 consensus_4469#1 CGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATG-GTGTATGGATGGGGGGTTTGA 603 consensus_4469#2 TGTTGATAA---CTGA-TAAAGTGTAGAGTT--CCAGAAGTTGACTAACTTCAAACAAAT 562 * * ** * ** * * * * consensus_4469#0 TTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTA-TGTAGGGCAAAATGTAATTT 654 consensus_4469#1 CTTTGTGCGGA----GTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAG 659 consensus_4469#2 TTCTTTCCATA----ACATG-ACAAATATTACTTGGCC--CATGGACC--CCTGGAAAGC 613 * * * * ** * ** * * consensus_4469#0 TGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTA 714 consensus_4469#1 TGNT-------------------------------------------------------- 663 consensus_4469#2 CGGTGCGTGGTAAACG-------------------------------------------- 629 * * consensus_4469#0 CTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGA 774 consensus_4469#1 ------------------------------------------------------------ consensus_4469#2 ------------------------------------------------------------ consensus_4469#0 CAAATGCGA 783 consensus_4469#1 --------- consensus_4469#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||