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Oryza sativa
cluster # 4469 cluster # 4469       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4469#0 length = 783 sequences # 1  
consensus_4469#1 length = 663 sequences # 1  
consensus_4469#2 length = 629 sequences # 1  

consensusID : consensus_4469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence
                              [CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTTCTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATCTCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGCATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGGGGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATGGAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATGCGA]

[+] EMBL CB647314             [CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTTCTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATCTCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGCATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGGGGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATGGAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATGCGA]


>consensus_4469#0 CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGT GCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGG GCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGT TTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTT CTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATC TCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGC ATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGG GGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTT GAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATG GAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCA TTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTT GGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATC TACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATG CGA



consensusID : consensus_4469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence
                              [GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATGGATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACTGCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTTCTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAGAATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTTTGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGTGNT]

[+] EMBL CA764304             [GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATGGATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACTGCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTTCTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAGAATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTTTGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGTGNT]


>consensus_4469#1 GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATG GATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCC GACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGC AACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTAC TGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACT GCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAA GTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATT TATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTT CTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAG AATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTT TGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGT GNT



consensusID : consensus_4469#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCCCCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGTTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGCGAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGCAAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGCATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAAGCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGAAGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGGACCCCTGGAAAGCCGGTGCGTGGTAAACG]

[+] EMBL CB647315             [GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCCCCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGTTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGCGAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGCAAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGCATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAAGCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGAAGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGGACCCCTGGAAAGCCGGTGCGTGGTAAACG]


>consensus_4469#2 GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCC CCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCA TGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAG TTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGC GAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGC AAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTA ATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGC ATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAA GCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGA AGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGG ACCCCTGGAAAGCCGGTGCGTGGTAAACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4469#0      ----------------------------------------------CGGCCTCCCTCGGC 14
consensus_4469#1      GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATG 60
consensus_4469#2      ------------------------------------------GACCTATTCTTCTTCTTC 18
                                                                        *    *    

consensus_4469#0      GGCGGCG------CTGGAGGAATCGCA-TTGGAAAAGTGCGGCGTGATCGCGTGCACGCC 67
consensus_4469#1      GATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCC 120
consensus_4469#2      AAACGCAT-----CCAAATGACTTGC----------GCATTGTTTGA-CAAGTGTTCCCC 62
                          *        *      * * **          *    *  *** *  ***  * **

consensus_4469#0      GACTAGAAGAAAGGAGATAGGCTA-CACACGC-ACGAGGGGCGC----GCACTCACCGGG 121
consensus_4469#1      GACTAGAAGAAAGGAGATAGGCTA-CACACGC-ACGAGGGGCGC----GCACTCACCGGG 174
consensus_4469#2      AGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATG 122
                        * ****  *  *****   * *   **     * ** ***      * * *****  *

consensus_4469#0      CAGAGCAACCCAATCCTTATGAAGAACGGGAGCAAC-GTGCTCAGGGCAAAGAGAGCCGT 180
consensus_4469#1      CAGAGCAACCCAATCCTTATGAAGAACGGGAGCAAC-GTGCTCAGGGCAAAGAGAGCCGT 233
consensus_4469#2      TTCA-TAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGT 181
                         *  **   ***    *   *   * * ***    *  **   *      * * * **

consensus_4469#0      TTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTT 240
consensus_4469#1      TTTCTACTGTATTTTGCAGATGCA-----------GTTTGCAGCAGCTGTAGCTGCCCCA 282
consensus_4469#2      TGGGCACTTGAGCGTGTCTGCAAACCGACCAA---GCATTGGTCAACTGAAGTTGAATCG 238
                      *    ***       *                   *        *  *  ** *      

consensus_4469#0      CTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATC 300
consensus_4469#1      GTGGGCGAGCTACCAACTGC-----------ACGCTCGCCGATT--CAACTTCAGTTGAC 329
consensus_4469#2      GCGAGCGTGCAGTTGGTAGCT-----------CCCCCACTGGGG--CAGCTACAGCTGCT 285
                        *  *            *                            *  *   *     

consensus_4469#0      TCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGC 360
consensus_4469#1      CA---ATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCA 386
consensus_4469#2      GC---AAACTGCATCTG-CAAAATACTC-CTAAAACAGGTAAGCTGCCCACAGGTGAGCA 340
                           *  **    *          *    * *       **   *          *   

consensus_4469#0      ATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGG 420
consensus_4469#1      GTTCAAA-GGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTG--AAA 443
consensus_4469#2      TTGCAGGGGGGAGCAG-GCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAA 399
                       *  *   **  ** *   ** ** *           *    *  * ** *  *      

consensus_4469#0      --GGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTT 478
consensus_4469#1      --AGCCACTTGCA--ATCTGCATTGCTGAA-TCTCTGT-CTTTCTTG----------CTG 487
consensus_4469#2      CAATTGAATTAACACAACTGCATCTATAAA--ATGAGATCTATCTTGGACC---TAACAA 454
                                     * *   **   * **   *  *  ** * ***             

consensus_4469#0      TTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAA 538
consensus_4469#1      TGGAACACTTGTCAAACAATGCGCAAGTC---ATCTGGATGCGTTTGAAGAAGAAGAATA 544
consensus_4469#2      CAGCAAGATCGGCAGAAGATCTCCAAGCT---ACTAGTA---GCATGGACTCTTTGCGTG 508
                        * *   * * *  *         *      *         *                 

consensus_4469#0      TGGAAAAAAAACCCGA---AAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAA 595
consensus_4469#1      CGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATG-GTGTATGGATGGGGGGTTTGA 603
consensus_4469#2      TGTTGATAA---CTGA-TAAAGTGTAGAGTT--CCAGAAGTTGACTAACTTCAAACAAAT 562
                       *   * **      *   **     * *      *   *                    

consensus_4469#0      TTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTA-TGTAGGGCAAAATGTAATTT 654
consensus_4469#1      CTTTGTGCGGA----GTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAG 659
consensus_4469#2      TTCTTTCCATA----ACATG-ACAAATATTACTTGGCC--CATGGACC--CCTGGAAAGC 613
                       *   * *  *      **  *           **       *          *      

consensus_4469#0      TGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTA 714
consensus_4469#1      TGNT-------------------------------------------------------- 663
consensus_4469#2      CGGTGCGTGGTAAACG-------------------------------------------- 629
                       * *                                                        

consensus_4469#0      CTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGA 774
consensus_4469#1      ------------------------------------------------------------
consensus_4469#2      ------------------------------------------------------------
                                                                                  

consensus_4469#0      CAAATGCGA 783
consensus_4469#1      ---------
consensus_4469#2      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)