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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1549 fasta sequence
[TCTTTTTTTTAAGCCATAACAGGTCGTTCATAACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTTACAAGTGACAACCCAGAATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCATCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCGCCACGCCCATATCCTCATCTGAGCAACTTCTACCTGGAAACTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCAAACAATGCTTCATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCTTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTTTTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTTCCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCAAAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGATTTCTCTTTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAATCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGCAGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAACACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGGATTGTTCGCCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAAAATTTAAAACTTCCGCAAAACTTTTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGAAGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAGGCTTTAGCATCATTACAGCTTCGAAGTCCCCTTCGTTTCGCCATGGTTACAACAGAATTCGGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGGGCCTGCAGTAGAGGGCGGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGAGTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCGG]
[+] EMBL CB622661 [TCTTTTTTTTAAGCCATAACAGGTCGTTCATAACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTTACAAGTGACAACCCAGAATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCATCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCGCCACGCCCATATCCTCATCTGAGCAACTTCTACCTGGAAACTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCAAACAATGCTTCATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCTTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTTTTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATAT ]
[-] EMBL CB622660 [ AATAGTTTTTCACCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTTCCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCAAAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGATTTCTCTTTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAATCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGCAGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAACACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGGATTGTTCGCCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAAAATTTAAAACTTCCGCAAAACTTTTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGAAGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAGGCTTTAGCATCATTACAGCTTCGAAGTCCCCTTCGTTTCGCCATGGTTACAACAGAATTCGGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGGGCCTGCAGTAGAGGGCGGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGAGTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCGG]
consensusID : consensus_4472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence
[GGNATTAGAGAGCTCAGATTTGCTTTGAGATTGGTGATTANCACGTGTCGCCTAAGGCNCCTTCCAAGAGCCTGAAAACCACCAAAGGAAAATAAAGCTAAGCCATANCAGGTCGTTCATAACCCCAACCNTTCTCTGTCAGTGAAAANCACACATTTGCAGGCCTGACAAGTGACAACCCAGAATATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAGCGACTTCTACCTGGAAACTTCCATCAGCTTATAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGATCGTCTAACCTTCTTGTAACACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCCTCCCTCAGTTTGCCGATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGGAGAATACCCTCCCCCTTGTCTCG]
[-] EMBL CA764312 [GGNATTAGAGAGCTCAGATTTGCTTTGAGATTGGTGATTANCACGTGTCGCCTAAGGCNCCTTCCAAGAGCCTGAAAACCACCAAAGGAAAATAAAGCTAAGCCATANCAGGTCGTTCATAACCCCAACCNTTCTCTGTCAGTGAAAANCACACATTTGCAGGCCTGACAAGTGACAACCCAGAATATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGGGCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAAAGCCTCGGACGCAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCACCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAGCGACTTCTACCTGGAAACTTCCATCAGCTTATAGCTTGTTCTAATTCTTTATGGCCTTGTATACCAACACAAAGATCATCACGAAATAAGTGGTCATCCAAACCATCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATATTGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGATCGTCTAACCTTCTTGTAACACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTAGTTAAGTCATCCTCCCTCAGTTTGCCGATGCCACCGGTTACTATCTCACCTTGATTATTCTTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGGAGAATACCCTCCCCCTTGTCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4472#0 ------------------------------------------------------------
consensus_4472#1 GGNATTAGAGAGCTCAGATTTGCTTTGAGATTGGTGATTANCACGTGTCGCCTAAGGCNC 60
consensus_4472#0 -----------------------------TCTTTTTTTTAAGCCATAACAGGTCGTTCAT 31
consensus_4472#1 CTTCCAAGAGCCTGAAAACCACCAAAGGAAAATAAAGCTAAGCCATANCAGGTCGTTCAT 120
* ********* ************
consensus_4472#0 AACCCCAACCCTTCTCTGTCAGTGAAAAACACACATTTGCAGGCCTTACAAGTGACAACC 91
consensus_4472#1 AACCCCAACCNTTCTCTGTCAGTGAAAANCACACATTTGCAGGCCTGACAAGTGACAACC 180
********** ***************** ***************** *************
consensus_4472#0 CAGAATATATA--CTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGG 149
consensus_4472#1 CAGAATATATATACTACTCATTCTAAACACATTCCTGAAAACCACAGTTTTTGAGAGAGG 240
*********** ***********************************************
consensus_4472#0 GCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAA 209
consensus_4472#1 GCAAAACATTACAGCAGCATCACGAAAGGGTACCCCCACAAGCATTCGTACAGACAAAAA 300
************************************************************
consensus_4472#0 AGCCTCGGACGCAAAAACATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCATCA 269
consensus_4472#1 AGCCTCGGACGCAAAA-CATCAAGCTAGGCACTCCTCTTCAACTTCTTCCTCTTTCACCA 359
**************** **************************************** **
consensus_4472#0 CCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCGCCACGCCCATATCCTCATCTGAG 329
consensus_4472#1 CCTTTGGTTCTACACATCAACTTCTTACTCCAAAGCACCACGCCCATATCCTCATCTGAG 419
************************************ ***********************
consensus_4472#0 CAACTTCTACCTGGAAACTTCCATCAGCTTACAGCTTGTTCTAATTCTTTATGGCCTTGT 389
consensus_4472#1 CGACTTCTACCTGGAAACTTCCATCAGCTTATAGCTTGTTCTAATTCTTTATGGCCTTGT 479
* ***************************** ****************************
consensus_4472#0 ATACCAACACAAAGATCAAACAATGCTTCATCATCACGAAATAAGTGGTCATCCAAACCA 449
consensus_4472#1 ATACCAACACAAAGATCA---------------TCACGAAATAAGTGGTCATCCAAACCA 524
****************** ***************************
consensus_4472#0 TCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATAT 509
consensus_4472#1 TCTTTTCGAAACTCTTGGAGATTCTTTTGTCTCAGCTTCATCATCATCATCTCAGAATAT 584
************************************************************
consensus_4472#0 TGATTCC----------------------------------------------------- 516
consensus_4472#1 TGATTCCTCGTAGCCATCATTAACAGATAGTTAGGATCAGAAATCTCCAATTCAAACTGA 644
*******
consensus_4472#0 -----------------------AGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTA 553
consensus_4472#1 TCGTCTAACCTTCTTGTAACACCAGTTTCTCCTGGAGGTGATAGTCTTACAACATTTTTA 704
*************************************
consensus_4472#0 GTTAAGTCATCTTCCCTCAGTTTGCCAATGCCACCGGTTACTATCTCACCTTGATTATTC 613
consensus_4472#1 GTTAAGTCATCCTCCCTCAGTTTGCCGATGCCACCGGTTACTATCTCACCTTGATTATTC 764
*********** ************** *********************************
consensus_4472#0 TTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGAAGAATACCCTCCCCCTT 673
consensus_4472#1 TTGCGGGGACAGAATTTTTCACCCCAAGAATTCAAAAAATAGGAGAATACCCTCCCCCTT 824
****************************************** *****************
consensus_4472#0 TTCATCCCAGCACCAATGAGGACAACAGCGTGTCCTATCTGTGCGTGCAATTGTTTTTCA 733
consensus_4472#1 GTCTCG------------------------------------------------------ 830
**
consensus_4472#0 CCAGATTTTGATCGAGGGGACTTGTATATCTGGCAATAGCGGAGGAGACTTCTTCTTTTT 793
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 CCAGGAATGTAGGTAGCAACCATCGGAATGCCCTCTGCTAAGTTCTGACAAATAGTCTCA 853
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 AAGTCATCTCGTGGAATTGTGGATACATCTCTTGCAACATATCGGTTACCAGATTTCTCT 913
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 TTAGTGATCCCTTCTGATCTGAGAATCAGCGCGGTATGAAGGACACGGTGTAGGCCGTAA 973
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 TCTCTTGTAAGGCAGTTGATAGAAAGCACCTCAGGAAACTTATCCTCAAACTTTTTGTGC 1033
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 AGCTCAAATGGATCAATGCATTGCACCAGATCTGGGTCCTTGCCTTCCGAAATGCTAAAC 1093
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 ACCCTTTCCATAATCTCTACCGCTTTTGAGTATGCGAAAGCAACACATAGGGATTGTTCG 1153
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 CCTTGATCGTGAACTTCACCTACAACCTTTTTTTCCTGTGCATTTATTTCCCCCAAGCAA 1213
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 AATTTAAAACTTCCGCAAAACTTTTTGCCGCAATCACTGTTGGTGCAGTGAAATGCTGGA 1273
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 AGCTTGAAGAATAGGTGTTTTGTGGGTCTATTGATTGTTCCGCATGCTCGGCACTTCCAG 1333
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 GCTTTAGCATCATTACAGCTTCGAAGTCCCCTTCGTTTCGCCATGGTTACAACAGAATTC 1393
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 GGGGGGAGGCGAGACGGAGATGGCAGCCGTGGAGGTCGGCAGTACGGCTCGGCGCGGCGG 1453
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 GCCTGCAGTAGAGGGCGGCGGCGGGGCCCGGATGCCAGAGGCTGGGTGGTGCGCCGACGA 1513
consensus_4472#1 ------------------------------------------------------------
consensus_4472#0 GTAAGCCTCGCCTCGCCTCGCCTCGCCCCGCGGCGG 1549
consensus_4472#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||