Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4474 cluster # 4474       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4474#0 length = 989 sequences # 3  
consensusID : consensus_4474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 989
fasta sequence 
                              [TCTTCTCATCTCTGTGTGTTGTTACGTGCAACTTGGCAGCTGGACCTGAAGGGCCATGTGTACGGGCTGCTCGCGGCGCACCCGGTCGCGCCGCTGGTGTCGCTGCACCACCTCGACCGGCTCAACCCCATCTCCCCCAACTGGCTCAAGCGGCTGCCCGCCGTCCGGTCCCTCGTCGGCGCGTCACGCCACGACCCGTCGCGCACGCTGCAGCAGGCCATCTGCTACCACCACGACGCTCGCGGCGGCGGTCGCCGGCGGCGGCGGCGGCGGCAATTCACCCTGTCCGTGTCCGTTTCCTGGGGATACATGGTCCACCTCTACCCGGCCGCCGTCCCGCCGCACGAGCTGCAGACGCCGCTGCGCACCTTCCGCGCGTGGTCGGGCTCGCCGGCGGGGCCGTTCACGGTGAACACGCGGCCGGAGGCCACGCCGAACGCGACGGCGCTGCCGTGCCACAGGAAGCCCATAATGTTCTACCTGGACCGCGTCACGGCGATGTCGACGTCGACCACGAACTGGACCTTGACGGAGTACGTGCCGGAGGTGTTGTCCGGCGAACGCTGCAACACCACCGGCTTCGACGCGGCCACCAAGGTGCAGATGATCCAGGTGATCGCGCTTAAGATGAACCCTGCCATTTGGAAACGGGCACCACGGAGACAATGCTGCAAGATGCAGAACGCAAACGAAGGGGACAAGTTGATCGTCAAAATACACGAGTGTAAGCCTGACGAGGCAACAACTTCAGTATAGACAAATGAGAGGTCGCGCGCGCGTGCCTGACTTGGTTAATCGTGATGAAGTAAAAAAAAAACAGTTTTCCCTGAAAGAACGGGAAGAAAGATTTTGTTTGGTTTCATTTGTAGACATAGCTTCATTCCTTCATGTGTGTGGGATACATTGATTGTACTAATGTACTTTTATCTGACTGCCTTGTTAATCGATAAAGAGATATCAAGCTATATATTTCTTTTGTGTTTTGCCAA]

[+] EMBL AK060334             [TCTTCTCATCTCTGTGTGTTGTTACGTGCAACTTGGCAGCTGGACCTGAAGGGCCATGTGTACGGGCTGCTCGCGGCGCACCCGGTCGCGCCGCTGGTGTCGCTGCACCACCTCGACCGGCTCAACCCCATCTCCCCCAACTGGCTCAAGCGGCTGCCCGCCGTCCGGTCCCTCGTCGGCGCGTCACGCCACGACCCGTCGCGCACGCTGCAGCAGGCCATCTGCTACCACCACGACGCTCGCGGCGGCGGTCGCCGGCGGCGGCGGCGGCGGCAATTCACCCTGTCCGTGTCCGTTTCCTGGGGATACATGGTCCACCTCTACCCGGCCGCCGTCCCGCCGCACGAGCTGCAGACGCCGCTGCGCACCTTCCGCGCGTGGTCGGGCTCGCCGGCGGGGCCGTTCACGGTGAACACGCGGCCGGAGGCCACGCCGAACGCGACGGCGCTGCCGTGCCACAGGAAGCCCATAATGTTCTACCTGGACCGCGTCACGGCGATGTCGACGTCGACCACGAACTGGACCTTGACGGAGTACGTGCCGGAGGTGTTGTCCGGCGAACGCTGCAACACCACCGGCTTCGACGCGGCCACCAAGGTGCAGATGATCCAGGTGATCGCGCTTAAGATGAACCCTGCCATTTGGAAACGGGCACCACGGAGACAATGCTGCAAGATGCAGAACGCAAACGAAGGGGACAAGTTGATCGTCAAAATACACGAGTGTAAGCCTGACGAGGCAACAACTTCAGTATAGACAAATGAGAGGTCGCGCGCGCGTGCCTGACTTGGTTAATCGTGATGAAGTAAAAAAAAAACAGTTTTCCCTGAAAGAACGGGAAGAAAGATTTTGTTTGGTTTCATTTGTAGACATAGCTTCATTCCTTCATGTGTGTGGGATACATTGATTGTACTAATGTACTTTTATCTGACTGCCTTGTTAATCGATAAAGAGATATCAAGCTATATATTTCTTTTGTGTTTTGCCAA]
[+] EMBL AK104544             [TCTTCTCATCTCTGTGTGTTGTTACGTGCAACTTGGCAGCTGGACCTGAAGGGCCATGTGTACGGGCTGCTCGCGGCGCACCCGGTCGCGCCGCTGGTGTCGCTGCACCACCTCGACCGGCTCAACCCCATCTCCCCCAACTGGCTCAAGCGGCTGCCCGCCGTCCGGTCCCTCGTCGGCGCGTCACGCCACGACCCGTCGCGCACGCTGCAGCAGGCCATCTGCTACCACCACGACGCTCGCGGCGGCGGTCGCCGGCGGCGGCGGCGGCGGCAATTCACCCTGTCCGTGTCCGTTTCCTGGGGATACATGGTCCACCTCTACCCGGCCGCCGTCCCGCCGCACGAGCTGCAGACGCCGCTGCGCACCTTCCGCGCGTGGTCGGGCTCGCCGGCGGGGCCGTTCACGGTGAACACGCGGCCGGAGGCCACGCCGAACGCGACGGCGCTGCCGTGCCACAGGAAGCCCATAATGTTCTACCTGGACCGCGTCACGGCGATGTCGACGTCGACCACGAACTGGACCTTGACGGAGTACGTGCCGGAGGTGTTGTCCGGCGAACGCTGCAACACCACCGGCTTCGACGCGGCCACCAAGGTGCAGATGATCCAGGTGATCGCGCTTAAGATGAACCCTGCCATTTGGAAACGGGCACCACGGAGACAATGCTGCAAGATGCAGAACGCAAACGAAGGGGACAAGTTGATCGTCAAAATACACGAGTGTAAGCCTGACGAGGCAACAACTTCAGTATAGACAAATGAGAGGTCGCGCGCGCGTGCCTGACTTGGTTAATCGTGATGAAGTAAAAAAAAAACAGTTTTCCCTGAAAGAACGGGAAGAAAGATTTTGTTTGGTTTCATTTGTAGACATAGCTTCATTCCTTCATGTGTGTGGGATACATTGATTGTACTAATGTACTTTTATCTGACTGCCTTGTTAATCGATAAAGAGATATCAAGCTATATATTTCTTTTGTGTTTTGCCAA]
[+] EMBL CF324778             [                          gGCAACTTGGCAGCTGGACCTGAAGGGCCATGTGTACGGGCTGCTCGCGGCGCACCCGGTCGCGCCGCTGGTGTCGCTGCACCACCTCGACCGGCTCAACCCCATCTCCCCCAACTGGCTCAAGCGGCTGCCCGCCGTCCGGTCCCTCGTCGGCGCGTCACGCCACGACCCGTCGCGCACGCTGCAGCAGGCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_4474#0
TCTTCTCATCTCTGTGTGTTGTTACGTGCAACTTGGCAGCTGGACCTGAAGGGCCATGTG
TACGGGCTGCTCGCGGCGCACCCGGTCGCGCCGCTGGTGTCGCTGCACCACCTCGACCGG
CTCAACCCCATCTCCCCCAACTGGCTCAAGCGGCTGCCCGCCGTCCGGTCCCTCGTCGGC
GCGTCACGCCACGACCCGTCGCGCACGCTGCAGCAGGCCATCTGCTACCACCACGACGCT
CGCGGCGGCGGTCGCCGGCGGCGGCGGCGGCGGCAATTCACCCTGTCCGTGTCCGTTTCC
TGGGGATACATGGTCCACCTCTACCCGGCCGCCGTCCCGCCGCACGAGCTGCAGACGCCG
CTGCGCACCTTCCGCGCGTGGTCGGGCTCGCCGGCGGGGCCGTTCACGGTGAACACGCGG
CCGGAGGCCACGCCGAACGCGACGGCGCTGCCGTGCCACAGGAAGCCCATAATGTTCTAC
CTGGACCGCGTCACGGCGATGTCGACGTCGACCACGAACTGGACCTTGACGGAGTACGTG
CCGGAGGTGTTGTCCGGCGAACGCTGCAACACCACCGGCTTCGACGCGGCCACCAAGGTG
CAGATGATCCAGGTGATCGCGCTTAAGATGAACCCTGCCATTTGGAAACGGGCACCACGG
AGACAATGCTGCAAGATGCAGAACGCAAACGAAGGGGACAAGTTGATCGTCAAAATACAC
GAGTGTAAGCCTGACGAGGCAACAACTTCAGTATAGACAAATGAGAGGTCGCGCGCGCGT
GCCTGACTTGGTTAATCGTGATGAAGTAAAAAAAAAACAGTTTTCCCTGAAAGAACGGGA
AGAAAGATTTTGTTTGGTTTCATTTGTAGACATAGCTTCATTCCTTCATGTGTGTGGGAT
ACATTGATTGTACTAATGTACTTTTATCTGACTGCCTTGTTAATCGATAAAGAGATATCA
AGCTATATATTTCTTTTGTGTTTTGCCAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)