These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence [GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAAACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGATATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTATGCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCAGGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAGTGTAGCACC-TCAAAAGGT-CAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGT-CCAGAAATTTTGATGTTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAATTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAAATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATTCGATCAGCTCTTTTGTTTTTTCT] [+] EMBL CA764945 [GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAAACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGATATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTATGCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCAGGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAGTGTAGCACC TCAAAAGGT CAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGT CCAGAAATTTTGATGTTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCT ] [-] EMBL C28644 [ GCACCNTCAAAAGGTCCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGGGCTTTATTTNTTATTTCACAGGAAAAGTCCCAGAAATTTTGATGTTTTTCTGGAATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAATTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAAATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATTCGATCAGCTCTTTTGTTTTTTCT] consensusID : consensus_4476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CCCTTCAGGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGGTCAAGGTGTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTGAAGATAGTGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATAATGCTGANTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTTTTTCTGGAATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCCCCTTCCTGCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU108722 [CCCTTCAGGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGGTCAAGGTGTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTGAAGATAGTGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATAATGCTGANTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTTTTTCTGGAATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCCCCTTCCTGCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4476#0 GAGAGCTTGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAA 60 consensus_4476#1 ------------------------------------------------------------ consensus_4476#0 ACTGAGCAAGAAACAAAAAATAAACGGCAGCTATCAGAGCATTTATAAGCAGTTTATTGA 120 consensus_4476#1 ------------------------------------------------------------ consensus_4476#0 TATTCTGAACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTAT 180 consensus_4476#1 ------------------------------------------------------------ consensus_4476#0 GCTTCATGAGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCA 240 consensus_4476#1 -----------------------------------------------------CCCTTCA 7 ****** consensus_4476#0 GGAATTTCGTAAGGGTTTTAAACTTGGGGAGAGACTATTGCGCCCTGCTATGGTCAAGGT 300 consensus_4476#1 GGAATTCCNTAAGGGTTTTAAACTTGGGGAGAGATTATTGCNCCCTGCTATGGTCAAGGT 67 ****** * ************************* ****** ****************** consensus_4476#0 GTCTGCAGGACCAGGCCCTGAAAAACCCGTGTATGGCGATCCTGCGATGGTTGAGGATAG 360 consensus_4476#1 GTCTNCAGGACCAGGCCCTGAAAAACCCGTGTATGACGANCCTGCGATGGTTGAAGATAG 127 **** ****************************** *** ************** ***** consensus_4476#0 TGTAGCACCTCAAAAGGTCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGA 420 consensus_4476#1 TGTAGCACCTCAAAAGGTCAAGGAGGCTGAANATGATGGTTTTGATGATGATAATGCTGA 187 ******************************* **************************** consensus_4476#0 GTGATGGGGCTTTATTTTTTATTTCACAGGAAAAGTCCAGAAATTTTGATGTTTTTCTGG 480 consensus_4476#1 NTGATGGGGCTTTANTTTTTATTTCACAGGAAAAGTCCAGAAANTTTGATGTTTTTCTGG 247 ************* **************************** **************** consensus_4476#0 AATGTGTCAAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCT 540 consensus_4476#1 AATGTGTCAANCAGGTNATAGGATAGAGTTAGAAATTTGACTCAAAANTTCCCCCTTCCT 307 ********** ***** ****************************** ************ consensus_4476#0 GCTGTTGACGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTCCTCCGCGTGTGGTCAA 600 consensus_4476#1 GCTGTTNACNCTGANTGTTGATATTGCCTCAAAANTTCTGTTTCC-----AAAAAAAAAA 362 ****** ** **** ******************* ********** ** consensus_4476#0 TTGTTATGGTTAGGAAATTTTCTCCGTTCATCGAGCAGTTGCAATGATAAGCAGAGGTAA 660 consensus_4476#1 AAAAAAAAAAAAAAAAA------------------------------------------- 379 * * *** consensus_4476#0 ATTGGTTTTTGATCGGTTGGGAGTATTGGAGATCATGTAAAACAACAGTAGTAGAGAATT 720 consensus_4476#1 ------------------------------------------------------------ consensus_4476#0 CGATCAGCTCTTTTGTTTTTTCT 743 consensus_4476#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||