These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAAGGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCT-CCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAACTTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTCTTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGTTCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAATTTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTTCCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC] [+] EMBL CF278034 [TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAAGGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCT CCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCT ] [-] EMBL CF278033 [ AACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCTNCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAACTTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTCTTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGTTCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAATTTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTTCCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC] consensusID : consensus_4483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTTAGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT] [-] EMBL CA764356 [TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTTAGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4483#0 TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAA 60 consensus_4483#1 ------------------------------------------------------------ consensus_4483#0 GGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAG 120 consensus_4483#1 ------------------------------------------------------------ consensus_4483#0 CACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAA 180 consensus_4483#1 ------------------------------------------------------------ consensus_4483#0 TAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAG 240 consensus_4483#1 --------------------TCAAATGGCNCCNATTTAAT-AATACTAATACATATGTGT 39 * * ** * * ** * ***** ** * consensus_4483#0 CCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAA 300 consensus_4483#1 TTAAT---CAAATTTAGTGACCTTA-GNCGGGCCAAAAGTGTCCG----TACGACCATCA 91 ** * * ** * * ** ** ** ** * ** * * * *** * consensus_4483#0 AACTTGTTCGAGACTTCCTCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCAT 360 consensus_4483#1 ACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCAT 151 * * ** ** ****** * ********* ** **** * * ********* ***** consensus_4483#0 TTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTA 420 consensus_4483#1 TTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTA 211 ***** * **** * ****** ***************** ** ** * ******** consensus_4483#0 GACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAAC 480 consensus_4483#1 GACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAAC 271 ********** ************************************ * ********* consensus_4483#0 TTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTC 540 consensus_4483#1 TTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTC 331 ****************** **************** ****** ** **** ** *** consensus_4483#0 TTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTG---AAAGCTTCT 597 consensus_4483#1 ------------ATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGT 379 *********** ************* *** * * ** * consensus_4483#0 GGTTCCCCTGCAGTGTTTGTGGT---------------------------TGCCATAGAC 630 consensus_4483#1 GGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGAC 439 ***** ***** ********* * * ****** consensus_4483#0 ACTTCCATTGTG------TTACCAGGCCTTAATAAT---TTGAGTTCACGTTCCCCTGAA 681 consensus_4483#1 ACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGAC 499 *** * ** **** ************* ********* ** ******* consensus_4483#0 GGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGT------TCTTCCTGCGTTGTAAGCA 735 consensus_4483#1 AGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCA 559 ******* *** * ******** ***** ***** ****** * * ** **** consensus_4483#0 CGGCCA-GGAGGAGAAGACTTGC------------------------------------- 757 consensus_4483#1 AGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTT 619 ***** * ** *** ******* consensus_4483#0 ------------------------------------------------------------ consensus_4483#1 GGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGAT 679 consensus_4483#0 -------------------------------------------- consensus_4483#1 CGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT 723 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||