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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4483 cluster # 4483       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4483#0 length = 757 sequences # 2  
consensus_4483#1 length = 723 sequences # 1  

consensusID : consensus_4483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence
                              [TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAAGGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCT-CCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAACTTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTCTTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGTTCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAATTTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTTCCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC]

[+] EMBL CF278034             [TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAAGGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCT CCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCT                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF278033             [                                                                                                              AACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCTNCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAACTTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTCTTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGTTCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAATTTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTTCCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC]


>consensus_4483#0 TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAA GGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAG CACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAA TAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAG CCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAA AACTTGTTCGAGACTTCCTCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCAT TTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTA GACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAAC TTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTC TTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGT TCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAAT TTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTT CCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC



consensusID : consensus_4483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence
                              [TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTTAGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT]

[-] EMBL CA764356             [TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTTAGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT]


>consensus_4483#1 TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTT AGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAG ATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTC AGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTT CTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTT CAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCAT GAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAG CAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTT GAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGA TCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCAT GGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGC GATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGT GAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4483#0      TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAA 60
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      GGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAG 120
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      CACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAA 180
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      TAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAG 240
consensus_4483#1      --------------------TCAAATGGCNCCNATTTAAT-AATACTAATACATATGTGT 39
                                          * * ** *   *    ** *      *****   ** *  

consensus_4483#0      CCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAA 300
consensus_4483#1      TTAAT---CAAATTTAGTGACCTTA-GNCGGGCCAAAAGTGTCCG----TACGACCATCA 91
                        **    *   * ** * *   **   ** ** ** * ** * *    *    ***  *

consensus_4483#0      AACTTGTTCGAGACTTCCTCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCAT 360
consensus_4483#1      ACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCAT 151
                      * *  **    ** ****** * ********* ** **** * * ********* *****

consensus_4483#0      TTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTA 420
consensus_4483#1      TTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTA 211
                      *****  * ****  * ****** ***************** **  ** *  ********

consensus_4483#0      GACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAAC 480
consensus_4483#1      GACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAAC 271
                      ********** ************************************ *  *********

consensus_4483#0      TTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTC 540
consensus_4483#1      TTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTC 331
                      ******************  ****************  ****** ** **** **  ***

consensus_4483#0      TTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTG---AAAGCTTCT 597
consensus_4483#1      ------------ATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGT 379
                                  ***********    *************    ***    *  * ** *

consensus_4483#0      GGTTCCCCTGCAGTGTTTGTGGT---------------------------TGCCATAGAC 630
consensus_4483#1      GGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGAC 439
                      *****  ***** *********                            * * ******

consensus_4483#0      ACTTCCATTGTG------TTACCAGGCCTTAATAAT---TTGAGTTCACGTTCCCCTGAA 681
consensus_4483#1      ACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGAC 499
                      *** *     **      **** *************   ********* ** ******* 

consensus_4483#0      GGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGT------TCTTCCTGCGTTGTAAGCA 735
consensus_4483#1      AGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCA 559
                       ******* *** * ******** ***** *****      ******  * * ** ****

consensus_4483#0      CGGCCA-GGAGGAGAAGACTTGC------------------------------------- 757
consensus_4483#1      AGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTT 619
                       ***** * ** *** *******                                     

consensus_4483#0      ------------------------------------------------------------
consensus_4483#1      GGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGAT 679
                                                                                  

consensus_4483#0      --------------------------------------------
consensus_4483#1      CGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT 723
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)