These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence [TCCTTTTTTTTGTAGTTATCGTATTGCATTCCAATGTATTACCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATGTACGTGGCTTACATGCTGCAACTGTTTATGATGTTGGCAAACATAATTTGGTAGATGCGTTGTATGTGAGGCGTCTCTTAGCTCTTACAACAGTATTCGGCAGGGAGATCAGCCATTCCAGGAAGAACAGTATTTGCACAGAATACAATCTAACGAAAGAGGGAAAATTTAGCTACTGCACTGGCAAAAATATGCAGAGAACTTGGTTTGAACTTATCTTTCACTGAGGTGATATCATGATAGTATTATCCTACCACAGTTAAGGAGCACGCGATAAATTTGAGGGCACGGGATTGCAACGTCCAGCTAAGTTGCATTGTAGTCATCGAATGAGGATGATTTGTGATCAAGGGGGACTACAAAGGGATTGAAATGCAGGTGAGCAGATTGTCCCCCAGAAGCTCTTGGCACAAGTCATAAGTCATTGTCCACTGTTTCCTAGGGTTCATATCTCCAATCCAGAACTCAACAGCCACCGGATGAACAACAGGTTTCAAGGTGCGTCGAGCTGTACAGTCCTCACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCAAGCTGACAGCTAATTAACCTCATCAAC-GGCCAACAGGATGGCCTAGTAAGCAATTCCGAACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCAAATGATTGCCATGTTTGTCCACAACGAACAGCCTCTTGGCGAACTCTCCTTTTCTTATCATCAAGAGCCTTGATTGCAGCCTTGTAGGATCTGTGGTCGCATGCGATAAATNTTTGAGTGAGGAAGACTAGACATGGCAACTAAACATTGTAAGGCTGTCTCTCGAACAACCATCATGTGAGGATACGAAACGAGCTGNGTAAGGACACTGACAATGATGTGGATGTTCTCCACAATGCATTCTTTTGCCTTTTTNATNCATC] [+] EMBL CB635261 [TCCTTTTTTTTGTAGTTATCGTATTGCATTCCAATGTATTACCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATGTACGTGGCTTACATGCTGCAACTGTTTATGATGTTGGCAAACATAATTTGGTAGATGCGTTGTATGTGAGGCGTCTCTTAGCTCTTACAACAGTATTCGGCAGGGAGATCAGCCATTCCAGGAAGAACAGTATTTGCACAGAATACAATCTAACGAAAGAGGGAAAATTTAGCTACTGCACTGGCAAAAATATGCAGAGAACTTGGTTTGAACTTATCTTTCACTGAGGTGATATCATGATAGTATTATCCTACCACAGTTAAGGAGCACGCGATAAATTTGAGGGCACGGGATTGCAACGTCCAGCTAAGTTGCATTGTAGTCATCGAATGAGGATGATTTGTGATCAAGGGGGACTACAAAGGGATTGAAATGCAGGTGAGCAGATTGTCCCCCAGAAGCTCTTGGCACAAGTCATAAGTCATTGTCCACTGTTTCCTAGGGTTCATATCTCCAATCCAGAACTCAACAGCCACCGGATGAACAACAGGTTTCAAGGTGCGTCGAGCTGTACAGTCCTCACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCAAGCTGACAGCTAATTAACCTCATCAAC GGCCAACAGGATGGCCTAGTAAGCAATTCCGAACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCAAATGATTGCCATGTTTGTCCACAACGAA ] [+] EMBL CA305742 [ ACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCAAGCTGACAGCTAATTAACCTCATCAACTGGCCAACAGGATGGCCTAGTAAGCAATTCCGAACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCACATGATTGCCATGTTTGTCGACAACGAACAGCCTCTTGGCGAACTCTCCTTTTCTTATCATCAAGAGCCTTGATTGCAGCCTTGTAGGATCTGTGGTCGCATGCGATAAATNTTTGAGTGAGGAAGACTAGACATGGCAACTAAACATTGTAAGGCTGTCTCTCGAACAACCATCATGTGAGGATACGAAACGAGCTGNGTAAGGACACTGACAATGATGTGGATGTTCTCCACAATGCATTCTTTTGCCTTTTTNATNCATC] consensusID : consensus_4488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 903 fasta sequence [CCGGCGGCAGCAGCTTCCCGCCGCCGCCGCCGGCGGTAGGCGTCGCCGGCGTGGCGTGCACGTACATGATCGAGAGGCCGGAGCTCCGGTGGGCGTTCATCCGCAAGGTGTACGCGATCGTGGCGACGCAGCTGGTGGTGACCGTCGCCATCGCCGCCGCCGTCTACTCCGTCCCGGCCATCCGCCGCTTCTTCCTCGCCCGCACGCCGGCGTCGCTCGCCGCCTTCGTGCTCGTCATCGTCGCCCCCCTCATCGTTATGCTGCCGACGATGTTTCTCCGTAAGAAGCATCCGATCAACCTCATCCTTCTAGCATTGTTCACCATTTGCATGAGCTGCGCCATTGGCCTGGGCTGCCTCTCTTCCAAAGCCGGCATTGCTATAATCGAAGCGGCATCCCTAACGTTCGGGCTGGTGTTCGGCCTGACGCTCTACACATTCTGGGCGGCCAAGAGAGGCCATGACTTCAGCTTCCTCCGCCCCTTCTTGGTCGCGGCCTTCCTCGTCCTCGTCCTCTACGGTCTCATCCAGATGTTGGTGCCAACGGGGAAAGTGGCGACGACGGTGTACGGGTGCGTGGCGGCGCTGGTGTTCTCCGGCTTCATCATCTACGACACGGACAATCTGATCAAGAGGCACGCCTACGATGAGTACGTCACGGCTGCCATCTCGCTCTACCTTGACACCGTCAACATCTTCATTGCCATTTTCACTGCACTCGACGCTTCAGATTCATAGAATATATCTCTAGAGTTTGTTACTAGTAGTTGTTACCCTGCTGAAAAGCAGCAGCCAGTAACTATAACTCTTTATAGGGAAAACATATGTAGTTATCGTATTGCATTCCAATGTATTAGCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATG] [+] EMBL AK070925 [CCGGCGGCAGCAGCTTCCCGCCGCCGCCGCCGGCGGTAGGCGTCGCCGGCGTGGCGTGCACGTACATGATCGAGAGGCCGGAGCTCCGGTGGGCGTTCATCCGCAAGGTGTACGCGATCGTGGCGACGCAGCTGGTGGTGACCGTCGCCATCGCCGCCGCCGTCTACTCCGTCCCGGCCATCCGCCGCTTCTTCCTCGCCCGCACGCCGGCGTCGCTCGCCGCCTTCGTGCTCGTCATCGTCGCCCCCCTCATCGTTATGCTGCCGACGATGTTTCTCCGTAAGAAGCATCCGATCAACCTCATCCTTCTAGCATTGTTCACCATTTGCATGAGCTGCGCCATTGGCCTGGGCTGCCTCTCTTCCAAAGCCGGCATTGCTATAATCGAAGCGGCATCCCTAACGTTCGGGCTGGTGTTCGGCCTGACGCTCTACACATTCTGGGCGGCCAAGAGAGGCCATGACTTCAGCTTCCTCCGCCCCTTCTTGGTCGCGGCCTTCCTCGTCCTCGTCCTCTACGGTCTCATCCAGATGTTGGTGCCAACGGGGAAAGTGGCGACGACGGTGTACGGGTGCGTGGCGGCGCTGGTGTTCTCCGGCTTCATCATCTACGACACGGACAATCTGATCAAGAGGCACGCCTACGATGAGTACGTCACGGCTGCCATCTCGCTCTACCTTGACACCGTCAACATCTTCATTGCCATTTTCACTGCACTCGACGCTTCAGATTCATAGAATATATCTCTAGAGTTTGTTACTAGTAGTTGTTACCCTGCTGAAAAGCAGCAGCCAGTAACTATAACTCTTTATAGGGAAAACATATGTAGTTATCGTATTGCATTCCAATGTATTAGCCATGAATTTGAGGTAAATATGAACCATTACAGTAATAATAATAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4488#0 TCCTTTTTTTTGTAGTTATCGTATTGCATTCCAATGTATTACCCATGAATTTGAGGTAAA 60 consensus_4488#1 -------------------------------------------------CCGGCGGCAGC 11 * ** * consensus_4488#0 TATGAACCATTACAGTAATAATAATAATGTACGTGGCTTACATGCTGCAACTGTTTATGA 120 consensus_4488#1 AGCTTCCCGCCGCCGC--CGCCGGCGGTAGGCGTCGCCGGCGTGGCGTGCACGTACATGA 69 ** * * * *** ** * ** * ** **** consensus_4488#0 TGTTGGCAAACATAATTTGGTAGATGCGTTGTATGTGAGGCGTCTCTTAGCTCTTACAAC 180 consensus_4488#1 TCGAGAGGCCGGAGCTCCGGTGGGCGT-TCATCCGCAAGGTGTA-CGCGATCGTGGCGAC 127 * * * *** * * * * * *** ** * * * ** consensus_4488#0 AGTATTCGGCAGGGAGATCAGCCATTCCAGGAAGAACAGTATTTGCACAGAATACAATCT 240 consensus_4488#1 -GCAGCTGGTGGTGACCGTCGCCATCGCCGC-----CGCCGTCTACTC------CGTCCC 175 * * ** * ** ***** * * * * * * * * * consensus_4488#0 AACGAAAGAGGGAAAATTTAGCTACTGCACTGGCAAAAATATGCAGAGAACTTG-GTTTG 299 consensus_4488#1 GGCCATCCGCCGCTTCTTCCTCGCCCGCAC-GCCGGCGTCGCTCGCCGCCTTCGTGCTCG 234 * * * ** * * **** * * * * * * * * * consensus_4488#0 AACTTATCTTTCACTGAGGTGATATCATGATAGTATTATCCTACCACAGTTAAGGAGCAC 359 consensus_4488#1 TCATCGTCGCCCCCCTCATCGTTATGCTGCCGACGATGTTTCTCCG----TAAGAAGCAT 290 * ** * * * *** ** * * ** **** **** consensus_4488#0 GCGATAAATTTGAGGGCACGGG-ATTG--CAACGTCCAGCTAAGTTGCATTGTAGTCATC 416 consensus_4488#1 CCGATCAACCTCATCCTTCTAGCATTGTTCACCATTTGCATGAGCTGCGCCATTGGCCTG 350 **** ** * * * * **** ** * * * ** *** * * * * consensus_4488#0 GAATGAGGATGATTTGTGATCAAGGGGGACTACAAAGGGATTGAAAT-----GCAGGTGA 471 consensus_4488#1 GGCTGCCTCTC-TTCCAAAGCCGGCATTGCTATAATCGAAGCGGCATCCCTAACGTTCGG 409 * ** * ** * * * *** ** * * * ** * * consensus_4488#0 GCAGATTGTCCCCCAGAAGCTCTTGGCACAAGTCATAAGTCATTGTCCACTGTTTCCTAG 531 consensus_4488#1 GCTGGTGTTCGGCCTGACGCTCTACACATTC-TGGGCGGCCAAGAGAGGCCATGACTTCA 468 ** * * ** ** ** ***** ** * * ** * * * * consensus_4488#0 GGTTCATATCTCCAATCCAGAACTCAACAGCCACCGGATGAACAACAGGTTTCAAGGTG- 590 consensus_4488#1 GCTTCCTCCGCCCCTTCTTGGTCGCGGCCTTCCTCGT-----CCTCGTCCTCTACGGTCT 523 * *** * ** ** * * * * * ** * * * * *** consensus_4488#0 CGTCGAGCTGTACAGTCCTCACCTTACGCAACAGGACACCAAGCCTGTGTATGTGCATCA 650 consensus_4488#1 CATCCAGATGT-TGGTGCCAAC---GGGGAAAGTGGCGACGACGGTGTACGGGTGCGTGG 579 * ** ** *** ** * ** * ** * * * * *** **** * consensus_4488#0 AGCTGACAGC--TAATTAACCTCATCAACGGCCAACAGGATGGCCTAGTAAGCAATTCCG 708 consensus_4488#1 CGGCGCTGGTGTTCTCCGGCTTCATCATCTACGACACGGACAATCTGATCAAGAGGCACG 639 * * * * * ****** * * * *** ** * * * ** consensus_4488#0 AACCCGAATGATACCATCATAGCAGAAACACTATCTTTAAGCAAATGATTGCCATGTTTG 768 consensus_4488#1 CCTACGA-TGAGTACGTCACGGC-----TGCCATCTC-------------GCTCTACCTT 680 *** *** * *** ** * **** ** * * consensus_4488#0 TCCACAACGAACAGCCTCTTGGCGAACTCTCCTTTTCTTATCATCAAGAGCCTTGATTGC 828 consensus_4488#1 GACACCGTCAACATCTTCATTGCCATTTTCACTGCACTCGACGCTTCAGATTCATAGAAT 740 *** **** * ** * ** * * ** ** * * consensus_4488#0 AGCCTTGTAGGATCTGTGGTCGCATGCGATAAATNTTTGAGTGAGGAAGACTAGACATGG 888 consensus_4488#1 ATATCTCTAGAGTTTG---TTACTAGTAGTTGTTACCCTGCTGAAAAGCAGCAGCCA--G 795 * * *** * ** * * * * * *** * * ** ** * consensus_4488#0 CAACTA-AACATTGTAAGGCTGTCTCTCGAACAACCATCATGTGAGGATACGAAACGAGC 947 consensus_4488#1 TAACTATAACTCTTTATAGGGAAAACATATGTAGTTATCGTATTGCATTCC--AATGTAT 853 ***** *** * ** * * * *** * * * * ** * consensus_4488#0 TGNGTAAGGACACTGACAATGATGTGGATGTTCTCCACAATGCATTCTTTTGCCTTTTTN 1007 consensus_4488#1 TAGCCATGAAT-TTGAGGTAAATATGAACCATTACAGTAATA-ATAATAATG-------- 903 * * * * *** ** ** * * * *** ** * ** consensus_4488#0 ATNCATC 1014 consensus_4488#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||