cluster # 449

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Oryza sativa
cluster # 449 cluster # 449 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_449#0 length = 1046 sequences # 1

consensus_449#1 length = 224 sequences # 1

consensusID : consensus_449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1046
fasta sequence

                              [CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCACCCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGTGCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTGCCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTACCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCGCTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGAAAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGATCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACGTGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCAGGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAGCTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTCGTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGGCTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTGCGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGTTCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTCCTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGGGGAGTGGTTTCCCTACTAATTTGTTC]

[+] EMBL AK107770             [CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCACCCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGTGCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTGCCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTACCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCGCTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGAAAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGATCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACGTGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCAGGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAGCTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTCGTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGGCTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTGCGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGTTCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTCCTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGGGGAGTGGTTTCCCTACTAATTTGTTC]




>consensus_449#0
CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCAC
CCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGT
GCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTG
CCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTA
CCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCG
CTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGA
AAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGA
TCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACG
TGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCA
GGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAG
CTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTC
GTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGG
CTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTG
CGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGT
TCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTAC
AAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTC
CTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGG
GGAGTGGTTTCCCTACTAATTTGTTC

consensusID : consensus_449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [GAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTACCTTTTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA]

[+] EMBL CF331137             [GAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTACCTTTTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA]




>consensus_449#1
GAGTAGATGCTTGTTTGTTGTGTACAAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAA
TGCTGCCATTTTGTTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTA
CCTTTTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_449#0      CTCTGCGACACGGTGGCGACACACACGCTCTCTCACTGCGTCGTCTCCTCTTTCTTTCAC 60
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      CCCGCAGGCACCCATGACTCGTGCGAAGCTGAAGCTGAGCTGATCCGCGCACGCACGCGT 120
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      GCTGCTGCTGCTTGTTGCTTCTCCACTTCTCTTCTCCCTCTAGCTACCACCTCACTACTG 180
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      CCGGGACAGTAGGCCGCGCTAGCTGTAAGCTGCTCGTCTCGAGATCTCGCGAGCTACGTA 240
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      CCGGCCATGGCCTCGGCGCGCCGCGGCCGCCGACGGAGAGTCCCGGTCGCCGCCTCGCCG 300
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      CTCCTCATCCTCCTCGTCTTCCTCCTCGCAGCTTCCCTCGGGGCGTGCAGTTCGGCGAGA 360
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      AAGAGGAGCGGCGACGGCGGCGGTGCGGTGGCGGAGGAGGTGTACTACTCCAGCTGGGGA 420
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      TCGGCGGTGGCGGTGGCGGGGCGGCGGAGGCTGGTGGGGCCGGGGTCGTCGCCGCCGACG 480
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      TGCCGGAGCCGGTGCGGCGGCTGCCACCCATGCCGGCCGGTGCACGTGGCCATCCAGCCA 540
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      GGCCGGAGCTTCCCGCTCGAGTACTACCCGGAGGCGTGGCGCTGCAAGTGCGGCGACAAG 600
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      CTCTTCATGCCCTGACGGTAATTTGGGACGACCAACGCAATGCACATAAGCGTCGTTCTC 660
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      GTTCACCACTCCGCCATTGATGACCATTGCTGCTAAGCTGCCCAAGCTTGCTCTTCCCGG 720
consensus_449#1      ------------------------------------------------------------
                                                                                 

consensus_449#0      CTGCGTCGCCATTGCTGCACGGAGCAAGAGACAATACTGCAGCCAAGAAGGACATTGCTG 780
consensus_449#1      -----------------------------------------------GAGTAGATGCTTG 13
                                                                     ** * **   **

consensus_449#0      CGAAGATCGATCAATCACGCAGGCTTCGATGGGTTGGTGTGTGTAACGACATTGTTGAGT 840
consensus_449#1      TTTGTTGTGTACAAAAAGAGGGA-----GCGGACGAGGGCGAGAGATGTTAATGCTGCCA 68
                             *  ***  *    *        **    * * * *  * *  * ** **   

consensus_449#0      TCTTGGAGATTGAACATCGAGTGTAATGCTGCTGTAAGTAGATGCTTGTTTGTTGTGTAC 900
consensus_449#1      TTTTG----TTTCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 124
                     * ***    **   * ** *    **         **  * *                * 

consensus_449#0      AAAAAGAGGGAGCGGACGAGGGCGAGAGATGTTAATGCTGCCATTTTGTTTCTCCTCCTC 960
consensus_449#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTCTTCCCTTTCCGTACCTT 184
                     ***** *   *    *  *     * * *    **  **    **   ****    *** 

consensus_449#0      CTCTCCTTTCATTTGTTTTTTTTTTTCTCTGTTGTTTGTTCTTCCCTTGCGTTTTTTTGG 1020
consensus_449#1      TTCGTTAACAGCAGGGGCAAATTCCGGGCCGTTAAATTAA-------------------- 224
                      **           *      **     * ***   *                       

consensus_449#0      GGAGTGGTTTCCCTACTAATTTGTTC 1046
consensus_449#1      --------------------------