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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[CTCTTCGAGGATCTTCGACACTAACAAACAGTCAATTGAATCAATATGTCGGACGGAGAAGAGGTTCCCCAGCAGGAGGTCGAGGCGGCCGAGGAGGTCGAGGTGCCGGCCGACAACGCCAGCGGCAGCATGTCTGTCCTCGACGCGCTCAAGGGCGTGCTCAAGATCTCCCTCATCCACGACGGTCTTGCCCGCGGTCTCCGTGAGGCCTCCAAGGCCCTTGACCGTCGCCAGGCCCACATGTGCGTCCTCAACGAGGCTTGCGAGGAGGAGGCCTACAAGAAGCTCGTTGTCGCTCTCTGCGGCGAGCACAAGATCCCTCTGATCAAGGTCCCCGACGGCAAGCAGCTCGGCGAGTGGGCTGGTCTCTGCCAGATCGACCGCGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTCAAGGACTGGGGTGAGGAGTCCCAGGAGCGCAGCATCCTGCTCAACTACTTCCAGACCGAGCAGTAAGCGTCGCCTCGACTTACCCGCTTCCAAGCAGCACACAGCTTGCGGTCTCGGCATTCTTCGACAAACAAAACTTTCTATCATGACGAGTACATAGTTCACGCGATGACATTTCCGGAGACGAACATCGCCAAAAGTCATGGTCATTAGCGAGTGTATTTGGCAGGGTTGGAAGGTTGACGAGTGTGAGGAGGAATTATTTCCTTTGGCAGCGTATATCATGCTCGCCAGCTGCATGGCTGGAGCTGTCTTGAAAGTAAAATGGGAAACCACGGACATTTTATGTTCTCAAAAA]
[+] EMBL AK108089 [CTCTTCGAGGATCTTCGACACTAACAAACAGTCAATTGAATCAATATGTCGGACGGAGAAGAGGTTCCCCAGCAGGAGGTCGAGGCGGCCGAGGAGGTCGAGGTGCCGGCCGACAACGCCAGCGGCAGCATGTCTGTCCTCGACGCGCTCAAGGGCGTGCTCAAGATCTCCCTCATCCACGACGGTCTTGCCCGCGGTCTCCGTGAGGCCTCCAAGGCCCTTGACCGTCGCCAGGCCCACATGTGCGTCCTCAACGAGGCTTGCGAGGAGGAGGCCTACAAGAAGCTCGTTGTCGCTCTCTGCGGCGAGCACAAGATCCCTCTGATCAAGGTCCCCGACGGCAAGCAGCTCGGCGAGTGGGCTGGTCTCTGCCAGATCGACCGCGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTCAAGGACTGGGGTGAGGAGTCCCAGGAGCGCAGCATCCTGCTCAACTACTTCCAGACCGAGCAGTAAGCGTCGCCTCGACTTACCCGCTTCCAAGCAGCACACAGCTTGCGGTCTCGGCATTCTTCGACAAACAAAACTTTCTATCATGACGAGTACATAGTTCACGCGATGACATTTCCGGAGACGAACATCGCCAAAAGTCATGGTCATTAGCGAGTGTATTTGGCAGGGTTGGAAGGTTGACGAGTGTGAGGAGGAATTATTTCCTTTGGCAGCGTATATCATGCTCGCCAGCTGCATGGCTGGAGCTGTCTTGAAAGTAAAATGGGAAACCACGGACATT ]
[-] EMBL CA759557 [ aaAGGTG CGGGCGACAACGCCAGGGGCAGCATGTTTGTCCTCGACGCGCTCAAGGGCGTGCTCAAGATCTCCCTCATCCACGACGGTCTTGCCCGCGGTCTCCGTGAGGCCTCCAAGGCCCTTGACCGTCGCCAGGCCCACATGTGCGTCCTCAACGAGGCTTGCGAGGAGGAGGCCTACAAGAAGCTTGTCGTCGCTCTTTCCGGCGAGCACAAGATCCCTCTGATCAAGGTCCCCGACAGCAAGCAGCTCGGCGAGTGGGCTGGTCTCTGCCAGATCGACCGCGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTAGTCGTCAAGGACTGGGGTGAGGAGTCCCAGGAGCGCAGCATCCTGCTCAACTACTTCCAGACCGAGCAGTAAGCGTCGCCTCGACCTACCCGCTTCCAAGCAGCACACAGCTTGCGGTCTCGGCATTTTTCGAC GATTAAACTTTCTATCACGACGGGGGCATATTCCACGCGATGGCATTTCCGGAGACGAACATCGCCAAAAGTTATGGTCATTAGCGAGTGTATTTGGCAGGGTTGGAAGGTTGATGAGTGTGAGGAGGAATTCATTCCTTTGGCAGTGTATGTCATGCTCGCCAGCTGCATGGCTGGAGCCGTCTTGAAAGCAAAATGGGAAACCACGGACATTTTATGTTCTCAAAAA]
consensusID : consensus_4492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CNCCAAGGGTGTTTTGAAGCTCGCTTTTCATGCACGNCGTTTTTGCCNCGGTCTCCGTNAGGTTCCAAGGCCNTCGACCGTCGCCAGGCCCACATGTGTTCNTGAACGAGGCNTGCGAGGAGGAGGCTTACAANAAGCTCGTCATTGCCCTGTGCTCCGAGCACAAGATCCCCCTGATCAAGGTGCCCGACGGAAAGCAGCTCGGCGAGTGGGCTGGTCTCTGCGTTCTTGACCGTGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCCTGCGTCGTTGTTAAGGACTGGGGCGAGGAGTCCCAGGAGCGCAGCGTCATCCTCAACTACTTCCAGACCGAGCAATAAGCTACGAATCATGAAAATGGGAAATTTGTCTTTTTGATATCCTGCATGGGGCGTTCACGATACCGGGAGTCACGGAGGGCATGGGTGTTTTTCGAGACGGATGCCGGTTCGGATGTACTCTAGCTTTTCCAGGCTGGCATTGGGACTCGGTCGGAAGGGTTTTAGAAAGGCGAAACACCGTTCATTCGGGCCTGGGAATAAAAAAAGCAATAACAAAAGTTGATGACTTGGAAAAAAAAA]
[+] EMBL AT003334 [CNCCAAGGGTGTTTTGAAGCTCGCTTTTCATGCACGNCGTTTTTGCCNCGGTCTCCGTNAGGTTCCAAGGCCNTCGACCGTCGCCAGGCCCACATGTGTTCNTGAACGAGGCNTGCGAGGAGGAGGCTTACAANAAGCTCGTCATTGCCCTGTGCTCCGAGCACAAGATCCCCCTGATCAAGGTGCCCGACGGAAAGCAGCTCGGCGAGTGGGCTGGTCTCTGCGTTCTTGACCGTGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCCTGCGTCGTTGTTAAGGACTGGGGCGAGGAGTCCCAGGAGCGCAGCGTCATCCTCAACTACTTCCAGACCGAGCAATAAGCTACGAATCATGAAAATGGGAAATTTGTCTTTTTGATATCCTGCATGGGGCGTTCACGATACCGGGAGTCACGGAGGGCATGGGTGTTTTTCGAGACGGATGCCGGTTCGGATGTACTCTAGCTTTTCCAGGCTGGCATTGGGACTCGGTCGGAAGGGTTTTAGAAAGGCGAAACACCGTTCATTCGGGCCTGGGAATAAAAAAAGCAATAACAAAAGTTGATGACTTGGAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4492#0 CTCTTCGAGGATCTTCGACACTAACAAACAGTCAATTGAATCAATATGTCGGACGGAGAA 60
consensus_4492#1 ------------------------------------------------------------
consensus_4492#0 GAGGTTCCCCAGCAGGAGGTCGAGGCGGCCGAGGAGGTCGAGGTGCCGGCCGACAACGCC 120
consensus_4492#1 ------------------------------------------------------------
consensus_4492#0 AGCGGCAGCATGTCTGTCCTCGACGCGCTCAAGGGCGTGCTCAAGATCTCCCT-CATCCA 179
consensus_4492#1 --------------------------CNCCAAGGGTGTTTTGAAGCTCGCTTTTCATGCA 34
****** ** * *** ** * * *** **
consensus_4492#0 CGACGGTCTTGCCCGCGGTCTCCGTGAGGCCTCCAAGGCCCTTGACCGTCGCCAGGCCCA 239
consensus_4492#1 CGNCGTTTTTGCCN-CGGTCTCCGTNAGGT-TCCAAGGCCNTCGACCGTCGCCAGGCCCA 92
** ** * ***** ********** *** ********* * *****************
consensus_4492#0 CATGTGCGTCCTCAACGAGGCTTGCGAGGAGGAGGCCTACAAGAAGCTCGTTGTCGCTCT 299
consensus_4492#1 CATGTGT-TCNTGAACGAGGCNTGCGAGGAGGAGGCTTACAANAAGCTCGTCATTGCCCT 151
****** ** * ******** ************** ***** ******** * ** **
consensus_4492#0 CTGCGGCGAGCACAAGATCCCTCTGATCAAGGTCCCCGACGGCAAGCAGCTCGGCGAGTG 359
consensus_4492#1 GTGCTCCGAGCACAAGATCCCCCTGATCAAGGTGCCCGACGGAAAGCAGCTCGGCGAGTG 211
*** *************** *********** ******** *****************
consensus_4492#0 GGCTGGTCTCTGCCAGATCGACCGCGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCTTG 419
consensus_4492#1 GGCTGGTCTCTGCGTTCTTGACCGTGAGGGCAACGCCCGCAAGGTCGTCAACTGCTCCTG 271
************* * ***** ******************************** **
consensus_4492#0 CGTCGTCGTCAAGGACTGGGGTGAGGAGTCCCAGGAGCGCAGCATCCTGCTCAACTACTT 479
consensus_4492#1 CGTCGTTGTTAAGGACTGGGGCGAGGAGTCCCAGGAGCGCAGCGTCATCCTCAACTACTT 331
****** ** *********** ********************* ** * ***********
consensus_4492#0 CCAGACCGAGCAGTAAGCGTCGCCTCGACTTACCCGCTTCCAAGCAGCACACAGCTTGCG 539
consensus_4492#1 CCAGACCGAGCAATAAGCTACGAATCA-----------TGAAAATGGGA---AATTTGTC 377
************ ***** ** ** * ** * * * ***
consensus_4492#0 GTCTCGGCATTCTTCGACAAACAAAACTTTCTATCATGACGAGTACATAGTTCACGCGAT 599
consensus_4492#1 TTTTTGATATCCT---GCATGGGGCGTTCACGATACCGGGAGTCACGGAGGGCATG---- 430
* * * ** ** ** * * ** * ** ** ** *
consensus_4492#0 GACATTTCCGGAGACGAACATCG--CCAAAAGT--CATGGTCATTAGCGAGTGTATTTGG 655
consensus_4492#1 GGTGTTTTTCGAGACGGATGCCGGTTCGGATGTACTCTAGCTTTTCCAGGCTGGCATTGG 490
* *** ****** * ** * * ** * * ** * ** ****
consensus_4492#0 CAG--GGTTGGAAGGTTGACGAGTGTGAGGAGGAATTATTTCCTTTGGCAGCGTATATCA 713
consensus_4492#1 GACTCGGTCGGAAGGGTTTTAGA---AAGGCGAAACACCGTTCATTCGGGCCTGGGAATA 547
* *** ****** * *** * ** * * ** * * * *
consensus_4492#0 TGCTCGCCAGCTGCATGGCTGGAGCTGTCTTGAAAGTAAAATGGGAAACCACGGACATTT 773
consensus_4492#1 AAAAAAGCAATAACAAAAGTTGA--TGACTTGGAAAAAAAAA------------------ 587
** ** * ** ** **** ** ****
consensus_4492#0 TATGTTCTCAAAAA 787
consensus_4492#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||