These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [GGTNCCCCCCCCNAAAGGGCAAAGNNACNCCCCGNTTTGGATNCGGGGGGTTCCCATTTTTTGCCCTTCGCTTCTGGANCCTTTCCCAANCANATGTGGGTTCTTNAAANCAGGAGTACGACCGAGAGCGGACCTTCCCATTGTCCACCGCAAGTGCTTNTAAGCGCATAATCGTAGCCACCGTTCTTTCAAGTTTCCGACCAACTCGCAGCAATATCGGCGNCAAGATAAACCGAGATGTTGGGCTGCTTGCGACTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATGATGTTGGTGTGTTGGGGGGAGGCATGTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGGANAAACCGGGCAGGCGGNCCACGTATTCGGGACNTTGATGATNCAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003354 [GGTNCCCCCCCCNAAAGGGCAAAGNNACNCCCCGNTTTGGATNCGGGGGGTTCCCATTTTTTGCCCTTCGCTTCTGGANCCTTTCCCAANCANATGTGGGTTCTTNAAANCAGGAGTACGACCGAGAGCGGACCTTCCCATTGTCCACCGCAAGTGCTTNTAAGCGCATAATCGTAGCCACCGTTCTTTCAAGTTTCCGACCAACTCGCAGCAATATCGGCGNCAAGATAAACCGAGATGTTGGGCTGCTTGCGACTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATGATGTTGGTGTGTTGGGGGGAGGCATGTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGGANAAACCGGGCAGGCGGNCCACGTATTCGGGACNTTGATGATNCAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [TCAAATCATTNTTCCCCCCAAGCCAAGNCTCCGTTTGGAACGGGGTTCCATTTTNGCCTNGCTCTNGNCCTTNCANCANATTTGGTCTCGAAGCAGAGTACNNCGANANCGGNCCTTCCATTGTCCCCCCCAAGTNNTTNTAAGNGCATAATCNTANCCNCCGTTNTTTCAAGTTTCCGACCAACTCGCANCAATNTCGNCGNCAANNTAAACCGANATNTTGGGCTNCTTGCGNCTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATAATGTTGGTGTNTTNGGGGNAGGCNTGTNTAAAANTGCAGNAAAAGTACGATNGTTTTTGTCTTTAAGTAGTTCGNCGTTGTCNCNCGGANAAACCGGGCAGGNGGNCCNCGTATTCGGGAGGTTGNNCANCCCATTTAGCTCTGTTCCCCTTAAAAAAAAANAAATAANAAAAAAA] [+] EMBL AT003768 [TCAAATCATTNTTCCCCCCAAGCCAAGNCTCCGTTTGGAACGGGGTTCCATTTTNGCCTNGCTCTNGNCCTTNCANCANATTTGGTCTCGAAGCAGAGTACNNCGANANCGGNCCTTCCATTGTCCCCCCCAAGTNNTTNTAAGNGCATAATCNTANCCNCCGTTNTTTCAAGTTTCCGACCAACTCGCANCAATNTCGNCGNCAANNTAAACCGANATNTTGGGCTNCTTGCGNCTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCATAATGTTGGTGTNTTNGGGGNAGGCNTGTNTAAAANTGCAGNAAAAGTACGATNGTTTTTGTCTTTAAGTAGTTCGNCGTTGTCNCNCGGANAAACCGGGCAGGNGGNCCNCGTATTCGGGAGGTTGNNCANCCCATTTAGCTCTGTTCCCCTTAAAAAAAAANAAATAANAAAAAAA] consensusID : consensus_4497#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [AAGGTACTNACCGAAGAAGCGGACCCTTTCCCATTGTNNCACCCGCCAAGTGNTTTTAAAGNGCCATAATNGTAGCCCCCGTTCTTTGCAAGTTNACCGACCAACCTCGACAGCAATATCGGCGNCAANATAAACCGAAATGTTGGGCTGCTNCCGACTTTGAAAGGCCCATGTCTTCNAAATTTTTTGGCCATAATGTTGGTGTGTTGGGGGNAGGCATNTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGNAAAAACCGGGCAGNCGGNCCACGTATTCGGNAGNTTNATNATACAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003761 [AAGGTACTNACCGAAGAAGCGGACCCTTTCCCATTGTNNCACCCGCCAAGTGNTTTTAAAGNGCCATAATNGTAGCCCCCGTTCTTTGCAAGTTNACCGACCAACCTCGACAGCAATATCGGCGNCAANATAAACCGAAATGTTGGGCTGCTNCCGACTTTGAAAGGCCCATGTCTTCNAAATTTTTTGGCCATAATGTTGGTGTGTTGGGGGNAGGCATNTNTAAAACTGCAGGAAAAGTACGATGGTATTTGTCTTTAAGTAGTTCGGCGTTGTCGCGCGNAAAAACCGGGCAGNCGGNCCACGTATTCGGNAGNTTNATNATACAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4497#0 GGTNCCCCCCCCNAAAGGGCAAAGNNACNCCCCGNTTTGGATNCGGGGGGTTCCCATTTT 60 consensus_4497#2 ------------------------------------------------------------ consensus_4497#1 ----------------TCAAATCATTNTTCCCCCCAAGCCAAGNCTCCGTTTGGAACGGG 44 consensus_4497#0 TTGCCCTTCGCTTCTGGANCCTTTCCCAANCANATGTGGGTTCTTNAAANCAGGAGTACG 120 consensus_4497#2 ----------------------------------------------AAGGTACTNAC-CG 13 consensus_4497#1 GTTCCATTTTNGCCTNGCTCTNGNCCTTNCANCANATTTGGTCTCGAAGCAGAGTAC--- 101 ** consensus_4497#0 ACCGAGAGCGGACCTTCCCATTGTCC-ACCG--CAAGTGCTTNTAAGCG--CATAATCGT 175 consensus_4497#2 AAGAAGCGGACCCTTTCCCATTGTNNCACCCGCCAAGTGNTTTTAAAGNGCCATAATNGT 73 consensus_4497#1 NNCGANANCGGNCCTTCC-ATTGTCCCCCC---CAAGTNNTTNTAAGNG--CATAATCNT 155 * * **** ***** ** ***** ** *** ****** * consensus_4497#0 AGCCACCGTTCTTT-CAAGTTT-CCGACCAACTC--GCAGCAATATCGGCGNCAAGATAA 231 consensus_4497#2 AGCCCCCGTTCTTTGCAAGTTNACCGACCAACCTCGACAGCAATATCGGCGNCAANATAA 133 consensus_4497#1 ANCCNCCGTTNTTT-CAAGTTT-CCGACCAACTC--GCANCAATNTCGNCGNCAANNTAA 211 * ** ***** *** ****** ********* ** **** *** ****** *** consensus_4497#0 ACCGAGATGTTGGGCTGCTTGCGACTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCA 291 consensus_4497#2 ACCGAAATGTTGGGCTGCTNCCGACTTTGAAAGGCCCATGTCTTCNAAATTTTTTGGCCA 193 consensus_4497#1 ACCGANATNTTGGGCTNCTTGCGNCTTTGANAGGCCCATGTCTTCGAAATTTTTTGGCCA 271 ***** ** ******* ** ** ****** ************** ************** consensus_4497#0 TGATGTTGGTGTGTTGGGGGGAGGCATGTNTAAAACTGCAGGAAAAGTACGATGGTATTT 351 consensus_4497#2 TAATGTTGGTGTGTTGGGGGNAGGCATNTNTAAAACTGCAGGAAAAGTACGATGGTATTT 253 consensus_4497#1 TAATGTTGGTGTNTTNGGGGNAGGCNTGTNTAAAANTGCAGNAAAAGTACGATNGTTTTT 331 * ********** ** **** **** * ******* ***** *********** ** *** consensus_4497#0 GTCTTTAAGTAGTTCGGCGTTGTCGCGCGGANAAACCGGGCAGGCGGNCCACGTATTCGG 411 consensus_4497#2 GTCTTTAAGTAGTTCGGCGTTGTCGCGCGNAAAAACCGGGCAGNCGGNCCACGTATTCGG 313 consensus_4497#1 GTCTTTAAGTAGTTCGNCGTTGTCNCNCGGANAAACCGGGCAGGNGGNCCNCGTATTCGG 391 **************** ******* * ** * *********** ***** ********* consensus_4497#0 GACNTTGATGATNCAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA 470 consensus_4497#2 NAGNTTNATNATACAATTTAGCTCTGTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAA 372 consensus_4497#1 GAGGTTGNNCANCCCATTTAGCTCTGTTCCCCTTAAAAAAAAANAAATAANAAAAAAA- 449 * ** * * ************* ************** *** ** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||