These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1398 fasta sequence [CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAGCGAGCGACGATGGGTTCTTGCACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCTGTGTTTGGCTGCTTGCTGCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAGGCAGACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCTCAAGGCCAACTTCCCTCACAATGGCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTACAACTTCGTCGATTTAATCGCTATCAGTCTCGGGGTGCCCAGCCCTCCTCCATACCTCTCTATAAGCAGCAAACCAATGAACAGCTCCGTATATCTGAAGGGTGTCAATTTTGCTTCAGGAGGAGCAGGGGTGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACGAGCAGATAGAGGGGGACTACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCATTCCTGGGGCCAAGGCCCACCTTGCCAAATCGCTCTTCGTCGTCGCCATCGGCGGCAACGACATCATCAACGACCTCCTGCTGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATGAGATCGTCAGCAATCTGGAAAATACCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTGGGATGCGACGGTTGTTCTTCGTGGGGATAGCACCGCTGGGATGTTGCCCGTTGATACGGGAGCTGAACCCCACCAAGGAATGTGATGCTCAGGCCAACTACATGGCAACTCGGTTAAACGATGCGGCGGTCGTGCTCCTCCGCGACATGAGCGAGACGCATCCGGACTTCACCTACTCCTTCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGAGGCACATGGCTATAAGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGCCGGCGAGCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCACGCAGGCCGCGGTTGAGAAGCTTATGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTTCCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGTGTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGAAATTTTGAATCATTAATTTAGGAGTTATATTTAGTGCCAGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCTAGATTTGAGGTGACTGATATTAATTTGTAAATTTACAGTCTCCTAAAATTACACATTTTGCAAAGTTTAAAATTGCATAGCTATACAATGTGAAACTTTACT] [+] EMBL AK070980 [CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAGCGAGCGACGATGGGTTCTTGCACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCTGTGTTTGGCTGCTTGCTGCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAGGCAGACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCTCAAGGCCAACTTCCCTCACAATGGCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTACAACTTCGTCGATTTAATCGCTATCAGTCTCGGGGTGCCCAGCCCTCCTCCATACCTCTCTATAAGCAGCAAACCAATGAACAGCTCCGTATATCTGAAGGGTGTCAATTTTGCTTCAGGAGGAGCAGGGGTGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACGAGCAGATAGAGGGGGACTACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCATTCCTGGGGCCAAGGCCCACCTTGCCAAATCGCTCTTCGTCGTCGCCATCGGCGGCAACGACATCATCAACGACCTCCTGCTGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATGAGATCGTCAGCAATCTGGAAAATACCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTGGGATGCGACGGTTGTTCTTCGTGGGGATAGCACCGCTGGGATGTTGCCCGTTGATACGGGAGCTGAACCCCACCAAGGAATGTGATGCTCAGGCCAACTACATGGCAACTCGGTTAAACGATGCGGCGGTCGTGCTCCTCCGCGACATGAGCGAGACGCATCCGGACTTCACCTACTCCTTCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGAGGCACATGGCTATAAGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGCCGGCGAGCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCACGCAGGCCGCGGTTGAGAAGCTTATGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTTCCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGTGTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGAAATTTTGAATCATTAATTTAGGAGTTATATTTAGTGCCAGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCTAGATTTGAGGTGACTGATATTAATTTGTAAATTTACAGTCTCCTAAAATTACACATTTTGCAAAGTTTAAAATTGCATAGCTATACAATGTGAAACTTTACT] consensusID : consensus_4499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 577 fasta sequence [GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACACCGTCGACATCGGCCTGTGCAGGCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTTTGGCTTGCTGCCCGACGCGCGCACGCGGCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAGGCGGACGTCGGGAACAACAACTACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTACCCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATTGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACCACAATAAATATGTAATAAATTTCCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGGCCTTAAGGGAAAATATTTTTTTCACGGCAAATACTTCTCTTGTTGTTCCATTAATTGCA] [+] EMBL CF326595 [GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACACCGTCGACATCGGCCTGTGCAGGCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTTTGGCTTGCTGCCCGACGCGCGCACGCGGCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAGGCGGACGTCGGGAACAACAACTACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTACCCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATTGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACCACAATAAATATGTAATAAATTTCCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGGCCTTAAGGGAAAATATTTTTTTCACGGCAAATACTTCTCTTGTTGTTCCATTAATTGCA] [+] EMBL CF325005 [ AAGGCCAACTACCCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCAACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATGGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4499#0 CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAG--CGAGCGACGATGGGTTC 58 consensus_4499#1 ---------------------GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACAC 39 ******** *** * * * *** ** ** * consensus_4499#0 TTGC-ACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCT-GTGTTTGGCTGCT 116 consensus_4499#1 CGTCGACATCGGCCTGTGCAGGCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTT-TGGCT 98 * **** * *** * ******** ******* * ******* *** * *** consensus_4499#0 TGCTGCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAG 176 consensus_4499#1 TGCTGCCCGACGCGCGCACGCGGCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAG 158 ******* *** **** ********** ******* * ***** ** ** ********* consensus_4499#0 GCAGACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCT------CAAGGCCAACTTC 230 consensus_4499#1 GCGGACGTCGGGAACAACAACTACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTAC 218 ** ***** ******************* ****** *********** * consensus_4499#0 CCTCACAATGGCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTAC 290 consensus_4499#1 CCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTAC 278 ******** *** **************** *********************** ****** consensus_4499#0 AACTTCGTCGATTTAATCGCTATCAGTCTCG-----GGGTGCCCAGCCCTCCTCCATACC 345 consensus_4499#1 AACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAA 338 *********** * * * * * ** * ** * * ** * * consensus_4499#0 TCTCTATAAGCAGCAAAC-CAATGAACAGCTCCGTATATCTGAAGGGTGTC--AATTTTG 402 consensus_4499#1 TTAAAATTAGAGGCTATTGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTC 398 * ** ** ** * * ** * * ** ** *** **** ** * consensus_4499#0 CTTCAGGAGGAGCAGGGGTGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACG 462 consensus_4499#1 GTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACC 458 *** ** * **** ** * * * * * ** * * ** consensus_4499#0 A--GCAGATA-GAGGGGGACTACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCA 519 consensus_4499#1 ACAATAAATATGTAATAAATTTCCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGG 518 * * *** * * * ** * ** * ** * * * * consensus_4499#0 TTCCTGGGGCCAAGGCCCACCTTGC--CAAATCGCTCT-TCGTCGTCGCCATCGGCGGCA 576 consensus_4499#1 CCTTAAGGGAAAATATTTTTTTCACGGCAAATACTTCTCTTGTTGTT-CCATTAATTGCA 577 *** ** * * ***** *** * ** ** **** *** consensus_4499#0 ACGACATCATCAACGACCTCCTGCTGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATG 636 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 AGATCGTCAGCAATCTGGAAAATACCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTG 696 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 GGATGCGACGGTTGTTCTTCGTGGGGATAGCACCGCTGGGATGTTGCCCGTTGATACGGG 756 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 AGCTGAACCCCACCAAGGAATGTGATGCTCAGGCCAACTACATGGCAACTCGGTTAAACG 816 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 ATGCGGCGGTCGTGCTCCTCCGCGACATGAGCGAGACGCATCCGGACTTCACCTACTCCT 876 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 TCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGAGGCACATGGCTATA 936 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 AGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGC 996 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 CGGCGAGCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCA 1056 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 CGCAGGCCGCGGTTGAGAAGCTTATGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTT 1116 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 CCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGT 1176 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 GTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGAAATTTTGAATCATT 1236 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 AATTTAGGAGTTATATTTAGTGCCAGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCT 1296 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 AGATTTGAGGTGACTGATATTAATTTGTAAATTTACAGTCTCCTAAAATTACACATTTTG 1356 consensus_4499#1 ------------------------------------------------------------ consensus_4499#0 CAAAGTTTAAAATTGCATAGCTATACAATGTGAAACTTTACT 1398 consensus_4499#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||